PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_31527_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 201aa    MW: 22660.4 Da    PI: 10.548
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_31527_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.2e-0897137954
                                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                           r RR+ri +++  L++l+P       +K++ a++L +A +Y+k L
  cra_locus_31527_iso_1_len_600_ver_3  97 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAAHYLKFL 137
                                          699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.86988137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-1389150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.62E-990142No hitNo description
SuperFamilySSF474592.49E-1492154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-1394143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-598137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
XHREIDQFSS GSATSIESTT TPPPPPLIFS YPPKLMRINN EFGSSSLHQK HRSSMETMRE  60
MIFRIAMMQP IQIDPESVKP PKRKNVKISK DPQSVAARHR RERISEKIRI LQRLVPGGTK  120
MDTASMLDEA AHYLKFLKKQ VQSLELEQAS SNARPNLNHN AAGIPITMAT AATTYSNFIK  180
SCQLPPSHMQ MLSXENMGIH X
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074025.12e-69transcription factor HEC2-like
SwissprotQ9SND42e-44HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A161X8305e-60A0A161X830_DAUCS; Uncharacterized protein
TrEMBLA0A1S2YYG39e-60A0A1S2YYG3_CICAR; transcription factor HEC2
STRINGXP_004511923.12e-60(Cicer arietinum)
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]