PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_31527_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 244aa    MW: 27225.6 Da    PI: 9.9474
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_31527_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.8e-08140180954
                                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                           r RR+ri +++  L++l+P       +K++ a++L +A +Y+k L
  cra_locus_31527_iso_2_len_839_ver_3 140 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAAHYLKFL 180
                                          699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.869131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-13132193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.34E-9133185No hitNo description
SuperFamilySSF474593.66E-14135197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-13137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-5141180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAAMPLIDNF SQQCSASAAA QASNYPYNII SSDYSSSSAN LHHHHREIDQ FSSGSATSIE  60
STTTPPPPPL IFSYPPKLMR INNEFGSSSL HQKHRSSMET MREMIFRIAM MQPIQIDPES  120
VKPPKRKNVK ISKDPQSVAA RHRRERISEK IRILQRLVPG GTKMDTASML DEAAHYLKFL  180
KKQVQSLELE QASSNARPNL NHNAAGIPIT MATAATTYSN FIKSCQLPPS HMQMLSXENM  240
GIHX
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074025.14e-69transcription factor HEC2-like
SwissprotQ9SND45e-44HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A1S2YYG32e-59A0A1S2YYG3_CICAR; transcription factor HEC2
STRINGXP_004511923.13e-60(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]