PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_31652_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bZIP
Protein Properties Length: 210aa    MW: 23290 Da    PI: 4.7651
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_31652_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.62.1e-11137171438
                                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 
                                           k+ r++++NReAAr+sR+RKka+i++Le+   +L
  cra_locus_31652_iso_1_len_627_ver_3 137 QKKLRKLAQNREAARKSRLRKKAYIQQLENNQVKL 171
                                          6999*************************865444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.7E-9130180No hitNo description
SMARTSM003389.7E-4134197IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.691136173IPR004827Basic-leucine zipper domain
PfamPF001707.2E-8137172IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.93E-7138177No hitNo description
PROSITE patternPS000360141156IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
XKYSEIVDEY LGFGTEHASN LDQSTIFNPY TTVTAATTGT DLLSGSFNET ANANFPATFP  60
GSQTTQLQTE SQSYLAPILG EYHENWGDLT MEDICFYAGT STHVDGEDKS QQVEIGQFDG  120
AVTNHPVGIS KQNSLEQKKL RKLAQNREAA RKSRLRKKAY IQQLENNQVK LNQLQQEHQR  180
APQQEILISS MGDQSHTLSG NGAMAYDAEX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027123246.15e-61transcription factor TGA2.3-like isoform X1
RefseqXP_027123247.15e-61transcription factor TGA2.3-like isoform X1
RefseqXP_027175555.15e-61transcription factor TGA2.3-like
RefseqXP_027175556.15e-61transcription factor TGA2.3-like
TrEMBLA0A068UMV14e-58A0A068UMV1_COFCA; Uncharacterized protein