PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_31800_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MIKC_MADS

Protein Properties

Length: 161aa MW: 18499.7 Da PI: 4.6146

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_31800_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	27.9	3.1e-09	2	28	24	50
HHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 24 AeELSvLCdaevaviifsstgklyeys 50 A+E+ vLCd+++a+i++s++g++ +s cra_locus_31800_iso_1_len_481_ver_3 2 AYEIAVLCDIDIALIMISPSGRISFFS 28 9********************987665 PP
2	K-box	18.9	6.5e-08	81	158	7	84
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieel 80 + ++++e +++e+ +L+ ++e+ ++++R l + sl+eL++ e+ L k l+ i ++K+ ll ++ + cra_locus_31800_iso_1_len_481_ver_3 81 PRHLSSHTEGYRKEIINLQHQLEMAKEQLRVLEPDPQRFTSLNELESCEELLSKTLSIIEQRKKTLLNNHASSY 154 44667899**************************************************************9999 PP K-box 81 qkke 84 q+ cra_locus_31800_iso_1_len_481_ver_3 155 QETV 158 8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	10.582	1	31	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.62E-9	2	50	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.8E-6	2	24	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
XAYEIAVLCD IDIALIMISP SGRISFFSGT RRIEDVMLQY FHLSDEEKEL DQDSEGLVND 60 RECVISTLMR LKAEAGVSQS PRHLSSHTEG YRKEIINLQH QLEMAKEQLR VLEPDPQRFT 120 SLNELESCEE LLSKTLSIIE QRKKTLLNNH ASSYQETVEQ I

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027177611.1	4e-66	agamous-like MADS-box protein AGL104
TrEMBL	A0A068TZB5	5e-48	A0A068TZB5_COFCA; Uncharacterized protein
STRING	XP_010680585.1	5e-46	(Beta vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13070	14	16