PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_323_iso_181

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

TCP

Protein Properties

Length: 167aa MW: 18207 Da PI: 10.9305

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_323_iso_181	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.2	7.2e-39	28	118	2	87
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.. 73 ++k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as cra_locus_323_iso_181_len_499_ver_3 28 PPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKTDGETIQWLLQQAEPSIIAATGTGTIPASVLts 101 789******************************************************************66643 PP TCP 74 ...eaesssssasnsss 87 ++++ss+s++++++ cra_locus_323_iso_181_len_499_ver_3 102 sgnTNNTSSVSEHHHHH 118 33322222222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-32	33	118	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.45	34	88	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006412	Biological Process	translation
GO:0006633	Biological Process	fatty acid biosynthetic process
GO:0009060	Biological Process	aerobic respiration
GO:0015979	Biological Process	photosynthesis
GO:0015992	Biological Process	proton transport
GO:0018298	Biological Process	protein-chromophore linkage
GO:0022904	Biological Process	respiratory electron transport chain
GO:0046034	Biological Process	ATP metabolic process
GO:0005840	Cellular Component	ribosome
GO:0009522	Cellular Component	photosystem I
GO:0009535	Cellular Component	chloroplast thylakoid membrane
GO:0016021	Cellular Component	integral component of membrane
GO:0000287	Molecular Function	magnesium ion binding
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0003735	Molecular Function	structural constituent of ribosome
GO:0004129	Molecular Function	cytochrome-c oxidase activity
GO:0004519	Molecular Function	endonuclease activity
GO:0004857	Molecular Function	enzyme inhibitor activity
GO:0005506	Molecular Function	iron ion binding
GO:0005507	Molecular Function	copper ion binding
GO:0005515	Molecular Function	protein binding
GO:0005524	Molecular Function	ATP binding
GO:0008137	Molecular Function	NADH dehydrogenase (ubiquinone) activity
GO:0008270	Molecular Function	zinc ion binding
GO:0016168	Molecular Function	chlorophyll binding
GO:0020037	Molecular Function	heme binding
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
AENKNNNNNK DDGSSTKKQQ QQQQIVPPPK RSSNKDRHKK VDGRGRRIRM PALCAARIFQ 60 LTRELGHKTD GETIQWLLQQ AEPSIIAATG TGTIPASVLT SSGNTNNTSS VSEHHHHHPG 120 NSVSLGLHSK FDEGFGIRMN WAMMSGNMGR SNLQPPTGGG SSWPSMX

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027097566.1	1e-61	transcription factor TCP20-like
Refseq	XP_027151767.1	1e-61	transcription factor TCP20-like
Swissprot	Q9LSD5	6e-43	TCP20_ARATH; Transcription factor TCP20
TrEMBL	A0A068UY75	3e-60	A0A068UY75_COFCA; Uncharacterized protein
STRING	XP_006484165.1	2e-56	(Citrus sinensis)
STRING	XP_006437974.1	1e-56	(Citrus clementina)

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]