PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_323_iso_52
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 147aa    MW: 16814.4 Da    PI: 7.5108
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_323_iso_52genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.21.5e-067798223
                                        EETTTTEEESSHHHHHHHHHHT CS
                             zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                                        kC++C++ F ++ n++rHir+H
  cra_locus_323_iso_52_len_670_ver_3 77 KCEKCSREFCSPVNYRRHIRVH 98
                                        7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.6197698IPR007087Zinc finger, C2H2
SMARTSM003550.00967698IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0006633Biological Processfatty acid biosynthetic process
GO:0009060Biological Processaerobic respiration
GO:0015979Biological Processphotosynthesis
GO:0015992Biological Processproton transport
GO:0018298Biological Processprotein-chromophore linkage
GO:0022904Biological Processrespiratory electron transport chain
GO:0046034Biological ProcessATP metabolic process
GO:0005840Cellular Componentribosome
GO:0009522Cellular Componentphotosystem I
GO:0009535Cellular Componentchloroplast thylakoid membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0000287Molecular Functionmagnesium ion binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0004129Molecular Functioncytochrome-c oxidase activity
GO:0004519Molecular Functionendonuclease activity
GO:0004857Molecular Functionenzyme inhibitor activity
GO:0005506Molecular Functioniron ion binding
GO:0005507Molecular Functioncopper ion binding
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0008137Molecular FunctionNADH dehydrogenase (ubiquinone) activity
GO:0008270Molecular Functionzinc ion binding
GO:0016168Molecular Functionchlorophyll binding
GO:0020037Molecular Functionheme binding
GO:0051539Molecular Function4 iron, 4 sulfur cluster binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MPVTKLMTTG TIDSMRSNDG NEGVDTFVRQ TIGKEPLLSF SRAGESSVQW IQLLHALDQQ  60
ELPGWPLLTP LKVQMQKCEK CSREFCSPVN YRRHIRVHRR SLNVDKESHK IRDMLAAFWD  120
KLSLEEAKEV VSFDDVMLKE VPGLSIS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076143.11e-79uncharacterized protein LOC105160463 isoform X1
RefseqXP_020548920.11e-79uncharacterized protein LOC105160463 isoform X1
RefseqXP_020548921.14e-80uncharacterized protein LOC105160463 isoform X2
TrEMBLE0CUZ74e-74E0CUZ7_VITVI; Uncharacterized protein
STRINGVIT_16s0050g00700.t016e-75(Vitis vinifera)