PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_3299_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HD-ZIP

Protein Properties

Length: 248aa MW: 29381.9 Da PI: 4.9824

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_3299_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.5	2.3e-18	43	93	6	56
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +f++eq++ Le++F + ++ +++ eLA++lgL+ rqV++WFqN+Ra++k cra_locus_3299_iso_1_len_1192_ver_3 43 RFSDEQVKSLESMFGQGTKIEPRKKIELARNLGLQPRQVSIWFQNKRARWK 93 79************************************************9 PP
2	HD-ZIP_I/II	115.5	3.2e-37	42	131	4	93
HD-ZIP_I/II 4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeen 77 +r+s+eqvk+LE++F + +k+ep++K elar+Lglqprqv +WFqn+RAR+k+kq+E++y L++++d l+++ cra_locus_3299_iso_1_len_1192_ver_3 42 KRFSDEQVKSLESMFGQGTKIEPRKKIELARNLGLQPRQVSIWFQNKRARWKSKQIEQEYGLLRDNFDDLNQQF 115 8*********************************************************************** PP HD-ZIP_I/II 78 erLekeveeLreelke 93 ++L++e+e+L +++++ cra_locus_3299_iso_1_len_1192_ver_3 116 KSLKEENESLLQQVQT 131 *********99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-19	31	101	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.568	35	95	IPR001356	Homeobox domain
SMART	SM00389	3.4E-17	37	99	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.27E-18	40	107	IPR009057	Homeodomain-like
Pfam	PF00046	9.2E-16	43	93	IPR001356	Homeobox domain
CDD	cd00086	9.00E-13	43	96	No hit	No description
PRINTS	PR00031	4.1E-6	66	75	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	70	93	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.1E-6	75	91	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.7E-12	95	136	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MEQEQDYYYS EQEQSLELDY TKEKKNYPTD HSKKKKGENS VKRFSDEQVK SLESMFGQGT 60 KIEPRKKIEL ARNLGLQPRQ VSIWFQNKRA RWKSKQIEQE YGLLRDNFDD LNQQFKSLKE 120 ENESLLQQVQ TLRSRLRNSI ENGVQRESEN GNDENCDKEE LKEKEKHRGA LYWEDDDDDD 180 DEQKTGLEKG KNCNNNVCVD GRRSLASSHS HSQTDDHHHN KEEEQYWCNF PTAGDLLDES 240 SSGWWNHI

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269\|PubMed:15604708, ECO:0000269\|PubMed:8771791}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	P46897	1e-37	ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
STRING	XP_007135294.1	2e-40	(Phaseolus vulgaris)

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792]