PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3304_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 524aa    MW: 56959.6 Da    PI: 9.2841
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3304_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-056890123
                                         EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                         + C++C+k F r  nL+ H r H
  cra_locus_3304_iso_2_len_2011_ver_3 68 FICEICNKGFQREQNLQLHRRGH 90
                                         89*******************88 PP
2zf-C2H212.70.00039145167123
                                          EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                          +kC++C+k +  +s+ k H +t+
  cra_locus_3304_iso_2_len_2011_ver_3 145 WKCEKCSKKYAVQSDWKAHSKTC 167
                                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.88E-76790No hitNo description
Gene3DG3DSA:3.30.160.609.0E-66790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.976890IPR007087Zinc finger, C2H2
PfamPF121712.1E-56890IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00446890IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM00355190110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.88E-7140165No hitNo description
SMARTSM00355140145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MSGNVFAVPS SLPVPGFSPD LINESSNPNP KPISNTNPSA KKKRNLPGTP DAEVIALSPK  60
TLMATNRFIC EICNKGFQRE QNLQLHRRGH NLPWKLRQKT NKDQVKKKVY ICPEKSCVHH  120
DPCRALGDLT GIKKHFSRKH GEKKWKCEKC SKKYAVQSDW KAHSKTCGTR EYKCDCGTLF  180
SRKDSFITHR AFCDALAEES SRITSIPTSN LNFRNDLPAH VFTGGSTGIP QIGGAEFGNQ  240
LKPPPPRLSL WLDQANSQQL NSVDVSGNSS IYMNSANIFT SSAGGNLSLS PLPPLQQSLK  300
DVDGGIMNKS TSMAETLSSL FSDDNHRNIG SNSSGPMSAT ALLQKAAQMG STKSNPIFFS  360
NSLGVMSSSN SSSSSPVPVP VPAFSLSHNR NQQLLQTTTS SLDNNSFEFD QSMLQTSQNE  420
SPSTTTVTMM NFQGQGLNGG SVEHHNSLTR DFLGMGAGEG GRPLLPHELA KFASMSSAMG  480
LDLGHFSSHH XSQSALVSTN VAYHSPSETD SIQTRNREFI TLYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-38141210372Zinc finger protein JACKDAW
5b3h_F5e-38141210372Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027175139.11e-177zinc finger protein JACKDAW
TrEMBLA0A068UDX21e-174A0A068UDX2_COFCA; Uncharacterized protein
STRINGcassava4.1_032876m1e-173(Manihot esculenta)