PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_33244_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 99aa MW: 10637.4 Da PI: 8.0603

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_33244_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.00098	2	20	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsr++++ +H + cra_locus_33244_iso_1_len_294_ver_3 2 DCGTLFSRRDSFITHRAFC 20 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 99 aa Download sequence Send to blast
XDCGTLFSRR DSFITHRAFC DALAEESART ISGNPLLSSQ SAIAMAPSSS SSSASQFIFS 60 MKKEQQTFNL RPEIPPWLAC PNRNPNPNSG PGPGPPSMX

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072643.1	8e-30	protein indeterminate-domain 11, partial
Refseq	XP_027126921.1	8e-30	protein indeterminate-domain 7-like
Refseq	XP_027167588.1	8e-30	protein indeterminate-domain 7
Swissprot	Q8H1F5	1e-14	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A068TNU1	2e-28	A0A068TNU1_COFCA; Uncharacterized protein
STRING	VIT_04s0008g01160.t01	9e-28	(Vitis vinifera)

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]