PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_33244_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 88aa MW: 9658.34 Da PI: 8.0603

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_33244_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.0008	2	20	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsr++++ +H + cra_locus_33244_iso_2_len_262_ver_3 2 DCGTLFSRRDSFITHRAFC 20 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
XDCGTLFSRR DSFITHRAFC DALAEESART ISGNPLLSSQ SAIAMAPSSS SSSASQFIFS 60 MKKEQQTFNL RPEIPPWLAC PNRNPNPX

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027126921.1	4e-30	protein indeterminate-domain 7-like
Refseq	XP_027167588.1	4e-30	protein indeterminate-domain 7
Swissprot	Q8H1F5	7e-15	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A068TNU1	1e-28	A0A068TNU1_COFCA; Uncharacterized protein
STRING	XP_009774627.1	8e-27	(Nicotiana sylvestris)
STRING	PGSC0003DMT400006385	8e-27	(Solanum tuberosum)

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]