PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_34408_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

GATA

Protein Properties

Length: 158aa MW: 17648.7 Da PI: 10.3077

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_34408_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	56.8	3e-18	51	85	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l cra_locus_34408_iso_1_len_579_ver_3 51 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 85 99*****************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50114	12.743	45	81	IPR000679	Zinc finger, GATA-type
SMART	SM00401	7.3E-18	45	95	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	3.47E-16	46	109	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.0E-14	49	83	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.66E-13	50	97	No hit	No description
Pfam	PF00320	3.9E-16	51	85	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	51	76	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
XITPSVSSSS ESDITTSSGK KTGKATLKKK EAAENGAGNN MVANNSEGRK CLHCATDKTP 60 QWRTGPMGPK TLCNACGVRY KSGRLVPEYR PAASPTFVLT KHSNSHRKVL ELRRQKEMLR 120 AQQHQQQFLH QNMMFDHVSN GDDYLIHQHI GPDFRQLI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250\|UniProtKB:Q8LAU9, ECO:0000269\|PubMed:25265867}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022863081.1	8e-83	GATA transcription factor 9-like
Swissprot	P69781	2e-61	GAT12_ARATH; GATA transcription factor 12
TrEMBL	A0A1U8AW42	3e-78	A0A1U8AW42_NELNU; GATA transcription factor
TrEMBL	A0A2G2YWZ5	2e-78	A0A2G2YWZ5_CAPAN; GATA transcription factor 12
STRING	XP_010267189.1	6e-79	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1919	23	63

Publications ? help Back to Top
Ravindran P,Verma V,Stamm P,Kumar PP A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor. Mol Plant, 2017. 10(10): p. 1307-1320 [PMID:28917589]