PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3458_iso_8
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family TALE
Protein Properties Length: 129aa    MW: 15442.3 Da    PI: 10.7139
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3458_iso_8genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.22.8e-0859912254
                                        SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                            Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54
                                         +yp++e++++L +++gL+ +q+ +WF N+R +
  cra_locus_3458_iso_8_len_829_ver_3 59 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 91
                                        69*****************************87 PP
2ELK315.5e-111233122
                                 ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                                        ELKh+L+++Y+++++++++E++
  cra_locus_3458_iso_8_len_829_ver_3 12 ELKHELKQGYKEKIVDIREEIL 33
                                        9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011886.1E-41233IPR005539ELK domain
PfamPF037892.0E-71233IPR005539ELK domain
PROSITE profilePS512139.9691232IPR005539ELK domain
PROSITE profilePS5007111.6773295IPR001356Homeobox domain
SMARTSM003897.6E-113499IPR001356Homeobox domain
SuperFamilySSF466892.87E-1734102IPR009057Homeodomain-like
CDDcd000862.65E-93596No hitNo description
Gene3DG3DSA:1.10.10.606.8E-263996IPR009057Homeodomain-like
PfamPF059201.8E-185291IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
XERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSLLK AWWQSHSKWP  60
YPTEEDKARL VQETGLQLKQ INNWFINQRK RNWHSNPSSS SSLPRKASVR GTLLIEFHCF  120
QNLYPSWHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A9e-1435100873Homeobox protein PKNOX1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010519640.12e-66PREDICTED: homeobox protein knotted-1-like 3
RefseqXP_018461395.15e-67PREDICTED: homeobox protein knotted-1-like 6, partial
RefseqXP_020265664.12e-66homeobox protein knotted-1-like LET12
SwissprotO223003e-66LET12_SOLLC; Homeobox protein knotted-1-like LET12
SwissprotP480003e-66KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A438KEK81e-65A0A438KEK8_VITVI; Homeobox protein knotted-1-like 3
STRINGCagra.0628s0006.1.p8e-67(Capsella grandiflora)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]