PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_3465_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 688aa MW: 77061.3 Da PI: 6.3237

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_3465_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.3	1.5e-07	625	679	1	46
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 r rWT+ E e+l+++vk++ + Wk+I + kgRt ++k++w++ cra_locus_3465_iso_5_len_2694_ver_3 625 RHRWTEAEVEKLKEGVKKFSAEeslsiPWKAIFEFGAdvfqKGRTSVDLKDKWRN 679 569***************************655446666***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.40.10	1.5E-5	385	426	IPR013083	Zinc finger, RING/FYVE/PHD-type
SuperFamily	SSF57903	1.9E-5	386	426	IPR011011	Zinc finger, FYVE/PHD-type
PROSITE profile	PS50090	7.004	620	681	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	5.5E-10	621	686	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.06E-9	622	682	IPR009057	Homeodomain-like
SMART	SM00717	7.5E-5	624	683	IPR001005	SANT/Myb domain
CDD	cd11660	9.22E-12	626	682	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence Send to blast
MTLAIVVEDR SGTGADTELA ERLGGEVKKK KKXXXXLLYI WIGTSLNSPE KISTVLQNDD 60 ARKSRDIPLC SSWNFPKLLQ KLHPVIQDFA VRLEINSHLK XFSDLVRNTP ELSVDIGKKC 120 KGTGSFRILE TLFAQGSQND YADASAICQK VEFNPSDSCE NVLWHMLHEM WTSNLKPGAP 180 EILKWDVQAF IAHKRNSLPM VALQKLMDAT LEEQIMQEDC YVPRAEPAKN FKLDVHMIEC 240 TAVEKLRTSA KDGPLANSSE RIAEHIDKKR CNLENEAEIG GMAMEYIGTH DAGNQHAAKK 300 FKQGVNIAAL ARVVKSIAST GDLLLTDFDF DNDGANPFAA TDGDEYHDER NDIGSKKKLS 360 LALSADTMKI PWKHNKLYVX SAIVAGNFLF CSSNTCPXVV HESCLGSAAK FDGDGKFNCS 420 FCAYSRALSE YLEVKTKASL ARKDLSTFIG LKVGNQPKLS MRSRKSKQNP VTGIDELNEN 480 HEENVDGDSL NKADHTYRRT NVEDRLQAEP SISYVGNGPP CSEKVLYLTH GELNALENEN 540 VEGEGREQER QSPIQPEEQQ IVIFQKSDGD ISSPKQADID YGNGGQALII RQNDEESSGL 600 KYSMRPRTDN EKCTYPAIPQ LRRKRHRWTE AEVEKLKEGV KKFSAEESLS IPWKAIFEFG 660 ADVFQKGRTS VDLKDKWRNI CKMDQKSE

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence Send to blast

MTLAIVVEDR SGTGADTELA ERLGGEVKKK KKXXXXLLYI WIGTSLNSPE KISTVLQNDD  60
ARKSRDIPLC SSWNFPKLLQ KLHPVIQDFA VRLEINSHLK XFSDLVRNTP ELSVDIGKKC  120
KGTGSFRILE TLFAQGSQND YADASAICQK VEFNPSDSCE NVLWHMLHEM WTSNLKPGAP  180
EILKWDVQAF IAHKRNSLPM VALQKLMDAT LEEQIMQEDC YVPRAEPAKN FKLDVHMIEC  240
TAVEKLRTSA KDGPLANSSE RIAEHIDKKR CNLENEAEIG GMAMEYIGTH DAGNQHAAKK  300
FKQGVNIAAL ARVVKSIAST GDLLLTDFDF DNDGANPFAA TDGDEYHDER NDIGSKKKLS  360
LALSADTMKI PWKHNKLYVX SAIVAGNFLF CSSNTCPXVV HESCLGSAAK FDGDGKFNCS  420
FCAYSRALSE YLEVKTKASL ARKDLSTFIG LKVGNQPKLS MRSRKSKQNP VTGIDELNEN  480
HEENVDGDSL NKADHTYRRT NVEDRLQAEP SISYVGNGPP CSEKVLYLTH GELNALENEN  540
VEGEGREQER QSPIQPEEQQ IVIFQKSDGD ISSPKQADID YGNGGQALII RQNDEESSGL  600
KYSMRPRTDN EKCTYPAIPQ LRRKRHRWTE AEVEKLKEGV KKFSAEESLS IPWKAIFEFG  660
ADVFQKGRTS VDLKDKWRNI CKMDQKSE