PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_3465_iso_7

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 732aa MW: 81226.1 Da PI: 5.4324

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_3465_iso_7	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.2	1.6e-07	669	723	1	46
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 r rWT+ E e+l+++vk++ + Wk+I + kgRt ++k++w++ cra_locus_3465_iso_7_len_3028_ver_3 669 RHRWTEAEVEKLKEGVKKFSAEeslsiPWKAIFEFGAdvfqKGRTSVDLKDKWRN 723 569***************************655446666***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.40.10	1.6E-5	429	470	IPR013083	Zinc finger, RING/FYVE/PHD-type
SuperFamily	SSF57903	2.04E-5	430	470	IPR011011	Zinc finger, FYVE/PHD-type
PROSITE profile	PS50090	7.004	664	725	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	5.9E-10	665	730	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.22E-9	666	726	IPR009057	Homeodomain-like
SMART	SM00717	7.5E-5	668	727	IPR001005	SANT/Myb domain
CDD	cd11660	4.10E-12	670	726	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence Send to blast
MAIEALATCK QLKISKLLDL VRSAPELSDD IGKNARELVS FRIQTLFAPG SQNDNADTSA 60 LCQKDEFDPA NSCEDVLCHI LQKVSDIKSQ TGAPEMLKWD GQXPLLPIKE TPCNVALQKV 120 XQDCLNSDIN VLFGKMFSLV LQSLVLRISD EELKDAMFEG SHSVFLSLKE RSGLVGRAHC 180 DDKIPGDVDN SNGPVQEFEG RIKDVQVVLP NQVVSPSTSK NGVDVSQERV PDRNSPPSKR 240 NRTDSNGGKP ERDTHKDQIM QEDCYDPCAE TAKKFKPDVH ITECAAVEKL RTSAKDGPLA 300 NSSERIAEHI DKKRCNLENE AEIGGMAMEY IGTHDAGNQH AAKKFKQGVN IAALARVVKS 360 IASTGDLLLT DFDFDNDGAN PFAATDGDEY HDERNDIGSK KKLSLALSAD TMKIPWKHNK 420 LYVXSAIVAG NFLFCSSNTC PXVVHESCLG SAAKFDGDGK FNCSFCAYSR ALSEYLEVKT 480 KASLARKDLS TFIGLKVGNQ PKLSMRSRKS KQNPVTGIDE LNENHEENVD GDSLNKADHT 540 YRRTNVEDRL QAEPSISYVG NGPPCSEKVL YLTHGELNAL ENENVEGEGR EQERQSPIQP 600 EEQQIVIFQK SDGDISSPKQ ADIDYGNGGQ ALIIRQNDEE SSGLKYSMRP RTDNEKCTYP 660 AIPQLRRKRH RWTEAEVEKL KEGVKKFSAE ESLSIPWKAI FEFGADVFQK GRTSVDLKDK 720 WRNICKMDQK SE

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence Send to blast

MAIEALATCK QLKISKLLDL VRSAPELSDD IGKNARELVS FRIQTLFAPG SQNDNADTSA  60
LCQKDEFDPA NSCEDVLCHI LQKVSDIKSQ TGAPEMLKWD GQXPLLPIKE TPCNVALQKV  120
XQDCLNSDIN VLFGKMFSLV LQSLVLRISD EELKDAMFEG SHSVFLSLKE RSGLVGRAHC  180
DDKIPGDVDN SNGPVQEFEG RIKDVQVVLP NQVVSPSTSK NGVDVSQERV PDRNSPPSKR  240
NRTDSNGGKP ERDTHKDQIM QEDCYDPCAE TAKKFKPDVH ITECAAVEKL RTSAKDGPLA  300
NSSERIAEHI DKKRCNLENE AEIGGMAMEY IGTHDAGNQH AAKKFKQGVN IAALARVVKS  360
IASTGDLLLT DFDFDNDGAN PFAATDGDEY HDERNDIGSK KKLSLALSAD TMKIPWKHNK  420
LYVXSAIVAG NFLFCSSNTC PXVVHESCLG SAAKFDGDGK FNCSFCAYSR ALSEYLEVKT  480
KASLARKDLS TFIGLKVGNQ PKLSMRSRKS KQNPVTGIDE LNENHEENVD GDSLNKADHT  540
YRRTNVEDRL QAEPSISYVG NGPPCSEKVL YLTHGELNAL ENENVEGEGR EQERQSPIQP  600
EEQQIVIFQK SDGDISSPKQ ADIDYGNGGQ ALIIRQNDEE SSGLKYSMRP RTDNEKCTYP  660
AIPQLRRKRH RWTEAEVEKL KEGVKKFSAE ESLSIPWKAI FEFGADVFQK GRTSVDLKDK  720
WRNICKMDQK SE

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3406	8	9