PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_34959_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB

Protein Properties

Length: 241aa MW: 27721.1 Da PI: 6.2306

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_34959_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.8e-17	2	49	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT +Ed++lvd+v+ +G g W+ a++ g++R++k+c++rw++yl cra_locus_34959_iso_1_len_721_ver_3 2 KGHWTSQEDKILVDYVRIHGEGKWRDLAQKTGLKRCGKSCRLRWLNYL 49 789*******************************************97 PP
2	Myb_DNA-binding	47.2	5.1e-15	57	99	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + +++E++l+++++++lG++ W++Ia +++ gR+++++k++w++ cra_locus_34959_iso_1_len_721_ver_3 57 NISEDEEDLIIKLHRLLGNR-WTLIAGRLP-GRSGNEIKNYWNTT 99 6699**************.*****.**********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	4.2E-13	1	51	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	25.705	1	53	IPR017930	Myb domain
Pfam	PF00249	2.1E-15	2	49	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.52E-28	2	96	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.7E-22	3	56	IPR009057	Homeodomain-like
CDD	cd00167	2.11E-10	5	49	No hit	No description
SMART	SM00717	5.0E-14	54	102	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	18.797	54	104	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-22	57	104	IPR009057	Homeodomain-like
Pfam	PF00249	7.3E-14	57	99	IPR001005	SANT/Myb domain
CDD	cd00167	1.02E-10	59	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
XKGHWTSQED KILVDYVRIH GEGKWRDLAQ KTGLKRCGKS CRLRWLNYLR PGIKLGNISE 60 DEEDLIIKLH RLLGNRWTLI AGRLPGRSGN EIKNYWNTTL SKKIVADEKN HNHNMTVTMQ 120 TQTDELEDDK KILLLSSSSD HDESVVANVS DPPPSLQHQP KGPNNTVKRS SITGCNNNNN 180 NNNDDDDFMS FWNMDFFSSP PPPHDQKAHQ EENRNNSHDH EVELQAIHEG EFDFSFDIFS 240 X

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-24	2	104	27	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2N9EGI8	6e-55	A0A2N9EGI8_FAGSY; Uncharacterized protein
STRING	evm.model.supercontig_28.71	1e-55	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154