PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_3503_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 444aa MW: 48134.7 Da PI: 8.3511

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_3503_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.6	1.7e-30	171	230	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed++++++tYeg+Hnh+ cra_locus_3503_iso_3_len_1673_ver_3 171 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApTCPVRKQVQRCAEDTSILITTYEGTHNHS 230 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.9E-32	156	232	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-27	164	232	IPR003657	WRKY domain
PROSITE profile	PS50811	28.116	166	232	IPR003657	WRKY domain
SMART	SM00774	3.0E-36	171	231	IPR003657	WRKY domain
Pfam	PF03106	1.2E-26	172	229	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MTVVREENVR LKMLLNKIEK DYKSLQMRFT HIFHPEPKTT IEEPDELVSL SLGIRTPIDH 60 QSAAKINKSD SSSISKSKVE DDDDEHLKLG LNYDSEEAAK LPADLNANQS PENSLTETKE 120 EELAGGETWP PGGNKVNLKT TRSLSGDDDL SQANVKRARV SVRARCETAT MNDGCQWRKY 180 GQKIAKGNPC PRAYYRCTVA PTCPVRKQVQ RCAEDTSILI TTYEGTHNHS LPVSARAMAS 240 TTSAAASALL SGSSSNSQSA TTTFHGLNLS DNSKTRPFYL PNSTSLPFPT ITLDLTASTP 300 TTTTTSDHFN VFSSRFPSTN LSFSPSQTNI LPTVWSNGNL NYGTVLPYNK TTVGHLYQPN 360 LPKNLYQLQN SQQVLTETLT KAITSDPSFR AVIAAALSMV SGGSASSGPA QASSTAESVG 420 KHLKWDGQTK IVSSNPLTSN GKGI

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MTVVREENVR LKMLLNKIEK DYKSLQMRFT HIFHPEPKTT IEEPDELVSL SLGIRTPIDH  60
QSAAKINKSD SSSISKSKVE DDDDEHLKLG LNYDSEEAAK LPADLNANQS PENSLTETKE  120
EELAGGETWP PGGNKVNLKT TRSLSGDDDL SQANVKRARV SVRARCETAT MNDGCQWRKY  180
GQKIAKGNPC PRAYYRCTVA PTCPVRKQVQ RCAEDTSILI TTYEGTHNHS LPVSARAMAS  240
TTSAAASALL SGSSSNSQSA TTTFHGLNLS DNSKTRPFYL PNSTSLPFPT ITLDLTASTP  300
TTTTTSDHFN VFSSRFPSTN LSFSPSQTNI LPTVWSNGNL NYGTVLPYNK TTVGHLYQPN  360
LPKNLYQLQN SQQVLTETLT KAITSDPSFR AVIAAALSMV SGGSASSGPA QASSTAESVG  420
KHLKWDGQTK IVSSNPLTSN GKGI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-22	161	232	7	77	Probable WRKY transcription factor 4
2lex_A	4e-22	161	232	7	77	Probable WRKY transcription factor 4
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027073481.1	1e-145	probable WRKY transcription factor 72
TrEMBL	A0A068U1Q5	1e-135	A0A068U1Q5_COFCA; Uncharacterized protein
STRING	EOY03394	1e-127	(Theobroma cacao)