PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_35120_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 171aa MW: 19123.4 Da PI: 10.2938

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_35120_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	70.5	4.4e-22	5	84	58	128
NAM 58 wyfFskrdkkyatgkrknratk........sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdW 121 +fF++ +k+y+tg+rk+r+++ + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+W cra_locus_35120_iso_1_len_512_ver_3 5 KHFFHRPSKAYTTGTRKRRKIQtecdlqggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNW 77 69***************73334555544778********.999*******5547999999 PP NAM 122 vmheyrl 128 vmh+y+l cra_locus_35120_iso_1_len_512_ver_3 78 VMHQYHL 84 ***98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	23.467	1	103	IPR003441	NAC domain
SuperFamily	SSF101941	5.89E-24	3	103	IPR003441	NAC domain
Pfam	PF02365	5.0E-8	6	84	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
DGLSKHFFHR PSKAYTTGTR KRRKIQTECD LQGGETRWHK TGKTRPVMVN GKQKGCKKIL 60 VLYTNFGKNR KPEKTNWVMH QYHLGQHEEE KEGELVVSKI FYQTQPRQCN WSSERANVNT 120 TTTTASGEGN SSDPTIISRR DSGGGSCSSR EINIGHRDEI MSNAAAAAAA A

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025656168.1	1e-96	NAC domain-containing protein 75
Refseq	XP_025656169.1	1e-96	NAC domain-containing protein 75
Refseq	XP_025656170.1	1e-96	NAC domain-containing protein 75
Swissprot	Q9M0F8	2e-75	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A444YZJ0	5e-96	A0A444YZJ0_ARAHY; Uncharacterized protein
STRING	XP_006451346.1	2e-91	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4057	24	44

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]