PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_3595_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Protein Properties

Length: 275aa MW: 31313.2 Da PI: 6.323

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_3595_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	47	4.7e-15	15	91	17	99
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 +p+ ++ +g+ + ++ l+d+ g+ W+v + +k +++ +l +GW+ Fv +n L+ gDfvvF+ ++++f cra_locus_3595_iso_1_len_1666_ver_3 15 NIPRAYTLYKKGN--LPAKVFLRDRYGNLWTVDV--EKIGNELFLVGGWSTFVLENSLELGDFVVFEPGSHNTF-- 84 5788877444555..7889*************..*****************************6544555.. PP EEEEE-S CS B3 93 vvkvfrk 99 +vk++ k cra_locus_3595_iso_1_len_1666_ver_3 85 NVKILGK 91 9998866 PP
2	B3	34.5	3.7e-11	188	269	13	96
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 ++ l +p + +++++++ + + +l+d++gr+W+ kl+ +k + r++ +GW + ++ n+++e D+++ ++++ cra_locus_3595_iso_1_len_1666_ver_3 188 RDELFVPFDVINDYNLD--LPSKTILRDSEGREWTTKLTPWKDG-RIWYYGGWASLCRVNRVNEADTCLCEFVK 258 56677788888888777..5668999**********888886.566778******************999 PP S.SEE..EEEE CS B3 87 r.sefelvvkv 96 r +++++++v cra_locus_3595_iso_1_len_1666_ver_3 259 RkGKKKYHIQV 269 87888888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01019	3.9E-10	1	92	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.3E-16	13	92	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	8.04E-18	13	92	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	4.5E-13	15	90	IPR003340	B3 DNA binding domain
CDD	cd10017	6.16E-12	16	89	No hit	No description
PROSITE profile	PS50863	12.703	16	92	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.5E-16	172	273	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.94E-17	172	273	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.884	176	275	IPR003340	B3 DNA binding domain
CDD	cd10017	1.19E-7	177	269	No hit	No description
SMART	SM01019	3.7E-5	179	275	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.5E-8	188	268	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MKSTQKQENX TLNWNIPRAY TLYKKGNLPA KVFLRDRYGN LWTVDVEKIG NELFLVGGWS 60 TFVLENSLEL GDFVVFEPGS HNTFNVKILG KNSVEKVGLG VCKSKIKIEE EESAEEEDGE 120 EEEESAGSAE EEDEEEDIVI LSSGPGESSG RNKTLKPSIS AAKISKAGCR ISPPKNPHFL 180 AKMRPRRRDE LFVPFDVIND YNLDLPSKTI LRDSEGREWT TKLTPWKDGR IWYYGGWASL 240 CRVNRVNEAD TCLCEFVKRK GKKKYHIQVT ILRDK

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1091	22	64