PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_35960_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ARF
Protein Properties Length: 605aa    MW: 67599 Da    PI: 7.0524
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_35960_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.52.6e-2369169198
                                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHH CS
                                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWk 66 
                                           f+k+lt sd++++g +++ +k+a+e+       + +   s++l+ +d++g +W++k+i+r++++r++lt+GW+
  cra_locus_35960_iso_1_len_1896_ver_3  69 FCKILTASDTSTHGGFSVLRKHATEClpqldmtQAI--PSQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWS 139
                                           99**************************99865444..4569******************************* PP

                                           HHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                                    B3  67 eFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                            Fv +++L +gD +vF   + +++el+v+v+r
  cra_locus_35960_iso_1_len_1896_ver_3 140 TFVTSKRLVAGDAFVFL--RGDDGELRVGVRR 169
                                           *****************..3489999****98 PP
2Auxin_resp103.62.4e-34195274183
                            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvr 73 
                                           a+ha++t++ F v+Y+Pr+  s+F++ ++k+++a+k+ +svGmRfkm+fe+eds+err++Gt+vgv d++p +
  cra_locus_35960_iso_1_len_1896_ver_3 195 ASHAITTHTLFVVYYKPRT--SQFIIGLNKYLEAVKHGFSVGMRFKMKFEGEDSPERRFTGTIVGVGDVSP-Q 264
                                           789***************6..9*************************************************.* PP

                            Auxin_resp  74 WpnSkWrsLk 83 
                                           W++S+WrsLk
  cra_locus_35960_iso_1_len_1896_ver_3 265 WSDSRWRSLK 274
                                           ********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.9E-3961184IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-3861198IPR015300DNA-binding pseudobarrel domain
CDDcd100173.27E-2068169No hitNo description
PfamPF023622.9E-2169169IPR003340B3 DNA binding domain
PROSITE profilePS5086311.91469171IPR003340B3 DNA binding domain
SMARTSM010192.9E-2069171IPR003340B3 DNA binding domain
PfamPF065077.7E-32195274IPR010525Auxin response factor
PfamPF023092.7E-7498551IPR033389AUX/IAA domain
SuperFamilySSF542773.24E-14508591No hitNo description
PROSITE profilePS5174527.202515596IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2408.9E-4518587No hitNo description
PfamPF023091.3E-5561599IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MNQELNQQIP QFNLHSKILC RVVHIRLLAE AETDEVYAQI TLHPEEDQNE PTSPDPCPPD  60
QPKRTVQSFC KILTASDTST HGGFSVLRKH ATECLPQLDM TQAIPSQDLV AKDLHGYEWR  120
FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DAFVFLRGDD GELRVGVRRL ARQQSSIPPS  180
VISSQSMHLG VLATASHAIT THTLFVVYYK PRTSQFIIGL NKYLEAVKHG FSVGMRFKMK  240
FEGEDSPERR FTGTIVGVGD VSPQWSDSRW RSLKIQWDEP TTIKRPERVS PWEIEPFEAT  300
SSVDISQSMT KSKRPRSLDV PVSENNSIHA AAPFWCPAPP ASRELNNLDG AEVQNNENKT  360
FWAPNQKDLN SSSSGSIMRP GGVWPGQLRK GSLDLFRDPA EDLSARSIVS DYYSPVSSKA  420
SNGPVLDQVE KGKRHENVLG CRLFGIDLWN NSNDSSLEKG APSTEIVADH ANNASASAGK  480
CDQDLLKSCK DKKQVQSDSS PNDGQNKQSF SASTRTRTKV QMQGVAVGRA VDLTSLGSYD  540
DLISELEKLF ELKGELRPRN KWEVVYTDDE GDMMLVGDDP WLEFCKMARK IFIYSSEEVK  600
KMSAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-148130156359Auxin response factor 1
4ldw_A1e-148130156359Auxin response factor 1
4ldw_B1e-148130156359Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027115457.10.0auxin response factor 11
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLA0A068UK570.0A0A068UK57_COFCA; Auxin response factor
STRINGPGSC0003DMT4000003450.0(Solanum tuberosum)
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]