PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3605_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family YABBY
Protein Properties Length: 170aa    MW: 18362.9 Da    PI: 7.3974
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3605_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY84.23.7e-263188562
                                YABBY  5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaesh 62
                                           +eq+Cyv+CnfC+t+lavsvP tslfk+vtvrCGhCt+llsvn++     +a+ +h
  cra_locus_3605_iso_1_len_1119_ver_3 31 APTEQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPTAVPNH 88
                                         679******************************************9998877776665 PP
2YABBY78.81.7e-2489128131170
                                YABBY 131 rfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                                          +++k+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  cra_locus_3605_iso_1_len_1119_ver_3  89 QLLKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 128
                                          579***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.3E-263283IPR006780YABBY protein
PfamPF046907.2E-2389128IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MSSSSAFAPD HHHHHVQQHH LATASAAAAA APTEQLCYVH CNFCDTVLAV SVPCTSLFKT  60
VTVRCGHCTN LLSVNMRGLL LPTAVPNHQL LKDEIQRIKA GNPDISHREA FSAAAKNWAH  120
FPHIHFGLMP DQPVKKSSVC QQQQDNIGED GGVLMKDGFL GPANIGVSPY
Functional Description ? help Back to Top
Source Description
UniProtPromotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019159560.14e-67PREDICTED: axial regulator YABBY 1
SwissprotQ8GW462e-42YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A438DZZ11e-64A0A438DZZ1_VITVI; Axial regulator YABBY 1
STRINGPOPTR_0002s14600.11e-68(Populus trichocarpa)
Publications ? help Back to Top
  1. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]