PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3610_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 324aa    MW: 35450.1 Da    PI: 8.5382
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3610_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.98.4e-09101125126
                                          --S---SGGGGTS--TTTTT-SS-SS CS
                              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                          ykt+lC+ f++ GtC+y  +C+FaH+
  cra_locus_3610_iso_1_len_1806_ver_3 101 YKTKLCCKFRA-GTCPYITNCNFAHS 125
                                          9**********.*************8 PP
2zf-CCCH42.41.1e-13207232126
                                          --S---SGGGGTS--TTTTT-SS-SS CS
                              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                          +kt++C+ +  tG+C++G++C+FaHg
  cra_locus_3610_iso_1_len_1806_ver_3 207 WKTRICNKWELTGYCPFGSKCHFAHG 232
                                          8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.71E-897130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-1498130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.972100127IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-4100126IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-6101125IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.282162174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-10203237IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-17203236IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-9206233IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.788206234IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-11207232IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDYRRDTGFA NGNVVQVLAG NSGNGGSGNW GRGSIDQALW ATEEDYNVWS QEALVDATSN  60
SNYDGRQSQS GGEPPQKRAR NSPMEDMAAS NRSKAIGKMF YKTKLCCKFR AGTCPYITNC  120
NFAHSVEELR NSRYQHWGLW QILIDPIKGD TARSSILKRA XPYGDNCTFL HDEQSKARES  180
EAISLGPGSG GGYSPTVTGT NLKPSNWKTR ICNKWELTGY CPFGSKCHFA HGAEELHRYG  240
GGGTESEAKT PTTPDPKQVA VPQKPPVDAV VGAGTSLPHS DTYHSAVPSQ KLSNVIQKTG  300
QRPHLKWKGP DKISKVYGDW IDDL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027182933.11e-163zinc finger CCCH domain-containing protein 12
RefseqXP_027182934.11e-163zinc finger CCCH domain-containing protein 12
SwissprotQ84UQ32e-81C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A068UXL71e-161A0A068UXL7_COFCA; Uncharacterized protein
STRINGXP_010240878.11e-123(Nelumbo nucifera)