PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3610_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 349aa    MW: 38209.3 Da    PI: 7.4744
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3610_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.89.2e-09101125126
                                          --S---SGGGGTS--TTTTT-SS-SS CS
                              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                          ykt+lC+ f++ GtC+y  +C+FaH+
  cra_locus_3610_iso_2_len_2001_ver_3 101 YKTKLCCKFRA-GTCPYITNCNFAHS 125
                                          9**********.*************8 PP
2zf-CCCH18.63.3e-06172197126
                                          --S---SGGGGTS--TTTTT-SS-SS CS
                              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                          yk + C+ f+    C+yGd+C+F H+
  cra_locus_3610_iso_2_len_2001_ver_3 172 YKGRHCKKFYTEEGCPYGDNCTFLHD 197
                                          78888********************7 PP
3zf-CCCH42.31.2e-13232257126
                                          --S---SGGGGTS--TTTTT-SS-SS CS
                              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                          +kt++C+ +  tG+C++G++C+FaHg
  cra_locus_3610_iso_2_len_2001_ver_3 232 WKTRICNKWELTGYCPFGSKCHFAHG 257
                                          8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.77E-897131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-1598133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.972100127IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-4100126IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-6101125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-9169199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-7170199IPR000571Zinc finger, CCCH-type
SMARTSM003560.058171198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23171199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-10228262IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-17228261IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-9231258IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.788231259IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-11232257IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDYRRDTGFA NGNVVQVLAG NSGNGGSGNW GRGSIDQALW ATEEDYNVWS QEALVDATSN  60
SNYDGRQSQS GGEPPQKRAR NSPMEDMAAS NRSKAIGKMF YKTKLCCKFR AGTCPYITNC  120
NFAHSVEELR KPPPNWQEIV AAHEEERGGS LEPREEFQIP TLGVVADSNR SYKGRHCKKF  180
YTEEGCPYGD NCTFLHDEQS KARESEAISL GPGSGGGYSP TVTGTNLKPS NWKTRICNKW  240
ELTGYCPFGS KCHFAHGAEE LHRYGGGGTE SEAKTPTTPD PKQVAVPQKP PVDAVVGAGT  300
SLPHSDTYHS AVPSQKLSNV IQKTGQRPHL KWKGPDKISK VYGDWIDDL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027182933.10.0zinc finger CCCH domain-containing protein 12
RefseqXP_027182934.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM31e-120C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A068UXL70.0A0A068UXL7_COFCA; Uncharacterized protein
STRINGMigut.N01445.1.p1e-169(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343