PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_36239_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YB

Protein Properties

Length: 215aa MW: 24435.1 Da PI: 8.4739

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_36239_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	178.8	4.9e-56	83	178	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlG 75 +eqdrflPianv+rimkk +P+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlG cra_locus_36239_iso_1_len_645_ver_3 83 KEQDRFLPIANVGRIMKKFIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLG 156 89********************************************************************** PP NF-YB 76 fedyveplkvylkkyrelegek 97 fedyv+plk+yl+kyrelegek cra_locus_36239_iso_1_len_645_ver_3 157 FEDYVNPLKQYLNKYRELEGEK 178 *****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	8.3E-52	77	187	IPR009072	Histone-fold
SuperFamily	SSF47113	8.07E-40	85	185	IPR009072	Histone-fold
Pfam	PF00808	1.1E-27	88	152	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	5.1E-20	116	134	No hit	No description
PROSITE pattern	PS00685	0	119	135	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	5.1E-20	135	153	No hit	No description
PRINTS	PR00615	5.1E-20	154	172	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
NNNNINNNNE QSCFLSVLNK THPFSANPNN NNEQDHPFLP ISTTSTNNNI QHFSSNSTTK 60 SXXXXXXXNS NNSSSNNTSN NNKEQDRFLP IANVGRIMKK FIPGNGKISK DAKETVQECV 120 SEFISFVTGE ASDKCQREKR KTINGDDIIW AITTLGFEDY VNPLKQYLNK YRELEGEKLN 180 VPKQQRLQQV VHDHHQKTNI PSYHTVYSST SLLSQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-44	83	173	2	92	Transcription factor HapC (Eurofung)
4g92_B	2e-44	83	173	2	92	Transcription factor HapC (Eurofung)
5g49_A	2e-44	83	173	7	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023919153.1	5e-78	nuclear transcription factor Y subunit B-7
Swissprot	Q9SIT9	2e-63	NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBL	A0A1Q3BA57	1e-74	A0A1Q3BA57_CEPFO; CBFD_NFYB_HMF domain-containing protein
STRING	cassava4.1_024313m	3e-73	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]