PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_37275_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB
Protein Properties Length: 170aa    MW: 19595.6 Da    PI: 9.3852
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_37275_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-17148148
                                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                         +g+WT+eEd++l+ +vk++G  +W+  +r  g+ R++k+c++rw++yl
  cra_locus_37275_iso_1_len_508_ver_3  1 KGKWTPEEDQKLIAYVKRYGIWNWSQMPRFAGLSRSGKSCRLRWLNYL 48
                                         79******************99************************97 PP
2Myb_DNA-binding46.21.1e-145597246
                                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                         g++T eE+e +++  + lG++ W+ Ia+++  gRt++++k++w++
  cra_locus_37275_iso_1_len_508_ver_3 55 GNFTLEEEETIIRMYQNLGSR-WSVIAKELR-GRTDNEIKNFWHT 97
                                         89*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.9E-11150IPR001005SANT/Myb domain
SuperFamilySSF466895.64E-29195IPR009057Homeodomain-like
PROSITE profilePS5129424.053152IPR017930Myb domain
PfamPF002492.7E-15148IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-24255IPR009057Homeodomain-like
CDDcd001672.14E-10348No hitNo description
PROSITE profilePS5129414.77553103IPR017930Myb domain
SMARTSM007171.0E-1253101IPR001005SANT/Myb domain
PfamPF002493.4E-135597IPR001005SANT/Myb domain
CDDcd001679.72E-95699No hitNo description
Gene3DG3DSA:1.10.10.608.7E-2456102IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
KGKWTPEEDQ KLIAYVKRYG IWNWSQMPRF AGLSRSGKSC RLRWLNYLSP DVKHGNFTLE  60
EEETIIRMYQ NLGSRWSVIA KELRGRTDNE IKNFWHTRLK KRFHNNNLVP KAQSPAVELL  120
SFQASSGSGS SSQLENSQEE IINNGSVLIY HNDGEVVSSS PESKDSTDWX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2511037108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024160087.16e-58transcription factor MYB8-like
SwissprotQ9LDR82e-45MY102_ARATH; Transcription factor MYB102
TrEMBLA0A2P6Q3D41e-56A0A2P6Q3D4_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004293617.15e-56(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]