PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_3737_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 160aa MW: 18275.4 Da PI: 4.6193

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_3737_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	32.6	2.1e-10	16	87	2	72
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.t 72 Wt +e +L++ + +e + ++ + ++W+ v +++ + ++rs +qCk+kw +l +ykk+k +e++ + cra_locus_3737_iso_2_len_987_ver_3 16 WTVSECVTLVNEISAIEGEWLQSVASFQKWQLVVENCNALEINRSLNQCKKKWAELLAEYKKVKPWEEGYwS 87 9*****************************************************************997644 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	9.5E-9	15	84	No hit	No description
PROSITE profile	PS50090	6.4	16	72	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MERGSRCTRS QAAPDWTVSE CVTLVNEISA IEGEWLQSVA SFQKWQLVVE NCNALEINRS 60 LNQCKKKWAE LLAEYKKVKP WEEGYWSCDS NEREELGLPE GFDRELFKAI DRYVKKKGGD 120 DNAEGPETDP ESDSQTPANT NKFVWKTGIP TMSLLISEHK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027090742.1	4e-57	uncharacterized protein LOC113711750
Refseq	XP_027090743.1	4e-57	uncharacterized protein LOC113711750
Refseq	XP_027149092.1	4e-57	uncharacterized protein LOC113749527
Refseq	XP_027149093.1	4e-57	uncharacterized protein LOC113749527
TrEMBL	A0A068VBT6	2e-54	A0A068VBT6_COFCA; Uncharacterized protein
STRING	Solyc08g069160.2.1	7e-44	(Solanum lycopersicum)