PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3760_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 362aa    MW: 39500.6 Da    PI: 10.1448
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3760_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.21.3e-31290347359
                                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                          D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  cra_locus_3760_iso_3_len_1641_ver_3 290 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPTMLIVTYEGEHNHS 347
                                          99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.2E-17237286IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.5E-33276347IPR003657WRKY domain
PROSITE profilePS5081130.733283349IPR003657WRKY domain
SuperFamilySSF1182903.92E-27285348IPR003657WRKY domain
SMARTSM007741.2E-37288348IPR003657WRKY domain
PfamPF031063.3E-27290346IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAVELMTGFR NDGFTSKMED NGAVQEAATA GLQSVEKLIR LLSQSQSQSH QQQIYKDPSS  60
KSSATEYQAV ADAAVNKFKK FISLLDRTRT GHARFRRGPV TNPTQQQLQK PQISSPPSSS  120
SLNQPSTNLI QVQPMEEEKE KLTKSSSRIY CPTPIQGLPP LPHNHHQLVK NVPTERKESS  180
TTINFAAASP VNSFMSSLTG DTDSLQPSMT SSGFQITNLS SHVSSAGKPP LSTSSFKRKC  240
SSMDDAAVKC GGGGASSGSR CHCPKKRKSR MKRVIRVPAI SMKMADIPPD DYSWRKYGQK  300
PIKGSPHPRG YYKCSSVRGC PARKHVERAL DDPTMLIVTY EGEHNHSHSA TEAPAALVLE  360
SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21276346271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027092449.10.0probable WRKY transcription factor 7
SwissprotQ9STX01e-103WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A068TYC90.0A0A068TYC9_COFCA; Uncharacterized protein
STRINGXP_009604893.11e-179(Nicotiana tomentosiformis)