PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3799_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 350aa    MW: 39893.6 Da    PI: 4.8969
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3799_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.28.3e-29137197158
                                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                                          +dDgynWrKYGqK++ g+ fprsYYrCt++   gC ++k+v++s+ed +++e+tY+g+H +
  cra_locus_3799_iso_1_len_1540_ver_3 137 VDDGYNWRKYGQKDILGAIFPRSYYRCTHRytqGCLATKQVQKSEEDSSIFEVTYKGRHSC 197
                                          59***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.9E-28127198IPR003657WRKY domain
PROSITE profilePS5081122.928132196IPR003657WRKY domain
SuperFamilySSF1182903.66E-25135197IPR003657WRKY domain
SMARTSM007741.2E-39137199IPR003657WRKY domain
PfamPF031067.0E-26138197IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEMINEGEGV SLIGELKQGR ELANQLKNQL EDPILFIKSM EISSCEELLE KIVSSYDKAL  60
SFLAWNNNNN NKSYKPSLKR KSFEFSSSHS SSPITPITGY SSDRIVSKHD YSKKRKTLPK  120
WREQVRVCSG IGQEGPVDDG YNWRKYGQKD ILGAIFPRSY YRCTHRYTQG CLATKQVQKS  180
EEDSSIFEVT YKGRHSCVQT SNSTSKTASI QKEIFKPNKP LLVQENQDIQ RLEDGLKVET  240
KELKTREEIF PLFSFPYTQI EQENVENQLL MSCYSPESES NFFASPWEDM NNFIIGSILE  300
KSSVESDATT IATPNSVTND SSPFGDLEIS IDDQVNFDPY IPLDTLAYFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-201371951474Disease resistance protein RRS1
5w3x_D6e-201371951474Disease resistance protein RRS1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027162429.11e-101probable WRKY transcription factor 53
TrEMBLA0A068UKB53e-96A0A068UKB5_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55532237