PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3799_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 52aa    MW: 6092.94 Da    PI: 10.3994
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3799_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.86.9e-113152122
                                         ---SS-EEEEEEE--TT-SS-E CS
                                 WRKY  1 ldDgynWrKYGqKevkgsefpr 22
                                         +dDgynWrKYGqK++ g+ fpr
  cra_locus_3799_iso_4_len_1693_ver_3 31 VDDGYNWRKYGQKDILGAIFPR 52
                                         69******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-91852IPR003657WRKY domain
PROSITE profilePS5081110.4872652IPR003657WRKY domain
SuperFamilySSF1182901.83E-82852IPR003657WRKY domain
PfamPF031063.7E-73252IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 52 aa     Download sequence    Send to blast
SKHDYSKKRK TLPKWREQVR VCSGIGQEGP VDDGYNWRKY GQKDILGAIF PR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023899819.11e-22probable WRKY transcription factor 53
SwissprotQ8H0Y86e-17WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLA0A2N9J3965e-22A0A2N9J396_FAGSY; Uncharacterized protein
STRINGXP_010266466.12e-20(Nelumbo nucifera)
Publications ? help Back to Top
  1. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]