PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_38068_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family Trihelix
Protein Properties Length: 53aa    MW: 6331.1 Da    PI: 10.1461
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_38068_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix37.56e-121355186
                             trihelix 51 kekwenlnkrykkikegekkrtsessstcpyfdqle 86
                                         kekwen+nk+++k+k+++kkr s +s+tcpyf+ql 
  cra_locus_38068_iso_1_len_301_ver_3  1 KEKWENINKYFRKTKDSKKKR-SMDSRTCPYFQQLS 35
                                         79******************8.88899*******96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 53 aa     Download sequence    Send to blast
KEKWENINKY FRKTKDSKKK RSMDSRTCPY FQQLSSLYSQ GTLVGPSDEP ENR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492854.17e-25PREDICTED: trihelix transcription factor GTL2 isoform X2
RefseqXP_016668746.18e-25PREDICTED: trihelix transcription factor GTL2-like isoform X2
RefseqXP_017630950.17e-25PREDICTED: trihelix transcription factor GTL2
SwissprotQ8H1816e-17GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLA0A0B0N7D52e-23A0A0B0N7D5_GOSAR; Uncharacterized protein
TrEMBLA0A0D2SL932e-23A0A0D2SL93_GOSRA; Uncharacterized protein
TrEMBLA0A1U8HRX82e-23A0A1U8HRX8_GOSHI; trihelix transcription factor GTL2-like isoform X2
STRINGGorai.007G283800.13e-24(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137001013
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]