PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_38360_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 184aa    MW: 20936.3 Da    PI: 11.1447
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_38360_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.81.1e-143889155
                                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                  HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                         +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++++k+L+
  cra_locus_38360_iso_1_len_549_ver_3 38 QRMTHIAVERNRRRQMNDYLAVLRSLMPPS---YAQRGDQASIVGGAINFVKELE 89
                                         79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.1E-133692IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.52E-113693No hitNo description
SuperFamilySSF474591.16E-1736108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.8153788IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-123889IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-104394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
XGGGGGGDRF PAAVANQIGR RKRRRTKSFK NKEEMENQRM THIAVERNRR RQMNDYLAVL  60
RSLMPPSYAQ RGDQASIVGG AINFVKELEQ LLQFLQSHKQ KQSTHSKLFT NFFTYPQYST  120
SSPSQQHHRT TTALADVDCM AEKPSRLADI EVTMAETHAN IKLLTRRRPK QLLTLVTGFH  180
SLSX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12024RKRRR
22025RKRRRT
33849RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027077975.14e-91transcription factor bHLH96-like
SwissprotQ9C7T45e-52BH096_ARATH; Transcription factor bHLH96
SwissprotQ9SK914e-52BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A068U0141e-88A0A068U014_COFCA; Uncharacterized protein
STRINGEMJ093927e-70(Prunus persica)
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]