PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_38360_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 241aa    MW: 27547.4 Da    PI: 9.3362
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_38360_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.21.7e-1495146155
                                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                          +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++++k+L+
  cra_locus_38360_iso_2_len_719_ver_3  95 QRMTHIAVERNRRRQMNDYLAVLRSLMPPS---YAQRGDQASIVGGAINFVKELE 146
                                          79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.8E-1393149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-1793164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.08E-1393150No hitNo description
PROSITE profilePS5088815.81594145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-1295146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-10100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
XDFYNLWDLE NLGLFGDNII TEDDNQKLNL ESLDQISLDQ QGQYGINWDS STNSSPDGSF  60
VGGGDRFPAA VANQIGRRKR RRTKSFKNKE EMENQRMTHI AVERNRRRQM NDYLAVLRSL  120
MPPSYAQRGD QASIVGGAIN FVKELEQLLQ FLQSHKQKQS THSKLFTNFF TYPQYSTSSP  180
SQQHHRTTTA LADVDCMAEK PSRLADIEVT MAETHANIKL LTRRRPKQLL TLVTGFHSLS  240
X
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17781RKRRR
27782RKRRRT
395106RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027077975.16e-90transcription factor bHLH96-like
SwissprotQ9C7T42e-51BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A068U0148e-88A0A068U014_COFCA; Uncharacterized protein
STRINGXP_010272971.15e-72(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]