PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_3849_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HD-ZIP

Protein Properties

Length: 321aa MW: 37509.1 Da PI: 7.9006

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_3849_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.4	3.4e-20	44	96	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++ +q+++Le+ Fe +++++ e++ +LA++lgL+ rqV +WFqNrRa++k cra_locus_3849_iso_4_len_1303_ver_3 44 KRRLSIDQVQALERIFEADNKLDPEKKIKLAQELGLQPRQVAIWFQNRRARWK 96 557899**********************************************9 PP
2	HD-ZIP_I/II	122.6	1.9e-39	43	133	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalke 75 kkrrls +qv++LE+ Fe+++kL+pe+K +la+eLglqprqva+WFqnrRAR+ktkqlE+dy+ Lk+ y++l+ cra_locus_3849_iso_4_len_1303_ver_3 43 KKRRLSIDQVQALERIFEADNKLDPEKKIKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYRLLKADYETLQL 116 9*********************************************************************** PP HD-ZIP_I/II 76 enerLekeveeLreelk 92 + +++e+e+e L +el+ cra_locus_3849_iso_4_len_1303_ver_3 117 NFSKVEQEKEGLVSELR 133 **********99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.67E-19	40	100	IPR009057	Homeodomain-like
SMART	SM00389	7.7E-20	41	102	IPR001356	Homeobox domain
CDD	cd00086	7.92E-17	43	99	No hit	No description
PROSITE profile	PS50071	16.989	43	98	IPR001356	Homeobox domain
Pfam	PF00046	1.8E-17	44	96	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.3E-20	49	96	IPR009057	Homeodomain-like
PRINTS	PR00031	1.6E-5	69	78	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	73	96	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.6E-5	78	94	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.2E-13	98	139	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MNLFNCPNSS GKNAKENLDY NNDFRGMDEE EGMEEMNYCS IGKKRRLSID QVQALERIFE 60 ADNKLDPEKK IKLAQELGLQ PRQVAIWFQN RRARWKTKQL ERDYRLLKAD YETLQLNFSK 120 VEQEKEGLVS ELRGLKEKLG EENAETSHSA EKPSSSPHQS PQRNHKIYRN INLSEEMKRM 180 KEFKEGLSSD DSDSSGILNE DNYLNSQPRL TSSCSTFEEG GMDQYSVFPF STPPLYHPLM 240 DYSSRGVTMM KGYYEQQQQQ QQHNLGRWKK IRISLQQMMM NMILAICFKL IKHPFSGTSL 300 IREIDQNQCF LPHSFSKIRA X

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	98	RRARWKTKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027089882.1	6e-96	homeobox-leucine zipper protein ATHB-16-like isoform X1
TrEMBL	A0A068TYI6	2e-88	A0A068TYI6_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12939	16	20