PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_384_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 489aa    MW: 56140.6 Da    PI: 9.0875
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_384_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.36.9e-07107128223
                                         EETTTTEEESSHHHHHHHHHHT CS
                             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                         +C+ Cg sF+ + +L++H+++H
  cra_locus_384_iso_1_len_1743_ver_3 107 VCHECGVSFKKPAYLRQHMQSH 128
                                         6*******************99 PP
2zf-C2H217.21.4e-05236261123
                                         EEET..TTTEEESSHHHHHHHHHH.T CS
                             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                         ++Cp  +C+++F  + n++rH++  H
  cra_locus_384_iso_1_len_1743_ver_3 236 FECPvdNCKRRFAFQGNMRRHMKEfH 261
                                         89*********************988 PP
3zf-C2H219.42.9e-06275299123
                                         EEET..TTTEEESSHHHHHHHHHHT CS
                             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                         y+C+   Cgk+F+  s L++H  +H
  cra_locus_384_iso_1_len_1743_ver_3 275 YVCSeiGCGKVFKYASKLRKHEDSH 299
                                         99*******************9888 PP
4zf-C2H214.20.00013366390223
                                         EET..TTTEEESSHHHHHHHHHH.T CS
                             zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                                         kC+   C  +Fs+ snL++Hi+  H
  cra_locus_384_iso_1_len_1743_ver_3 366 KCSfdGCAHTFSTMSNLNQHIKAvH 390
                                         688889***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.76E-660129No hitNo description
SMARTSM00355326284IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-598129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0098106128IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.136106133IPR007087Zinc finger, C2H2
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-6221258IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.75E-6234261No hitNo description
PROSITE profilePS5015710.221236266IPR007087Zinc finger, C2H2
SMARTSM003550.005236261IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280238261IPR007087Zinc finger, C2H2
SuperFamilySSF576677.29E-5272299No hitNo description
Gene3DG3DSA:3.30.160.603.2E-7272299IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0015275299IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.427275304IPR007087Zinc finger, C2H2
PROSITE patternPS000280277299IPR007087Zinc finger, C2H2
SMARTSM003550.63307332IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280309332IPR007087Zinc finger, C2H2
SMARTSM0035516335356IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.71E-6348403No hitNo description
PROSITE profilePS5015710.637365395IPR007087Zinc finger, C2H2
SMARTSM003550.0049365390IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-5366391IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280367390IPR007087Zinc finger, C2H2
SMARTSM0035516396422IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280398422IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
XXWELAALAE CECALLSTPG FLTKSGAPHR NSSTSPLSEI VSKVEMVEEK SKPVIFRDIR  60
RYYCEYCGIC RSKKALISAH ILSHHQDDLK QGEEDKRETH NGPKMNVCHE CGVSFKKPAY  120
LRQHMQSHSL EAXSIGSHTK NSKMQEANVN LNVIIPGRGT SXEDPSSKPQ SRFLERRGLR  180
IFFDLMLLNK VQLNHXHAFF VLFRGLSHVQ WMTVTPAXRR KDHLTRHLLQ HQGKLFECPV  240
DNCKRRFAFQ GNMRRHMKEF HMEPSSSDEV SAKQYVCSEI GCGKVFKYAS KLRKHEDSHV  300
KLETVEAFCS EPGCMKYFTN EQCLKEHIRS CHQHITCEKC GTRQLKKNIK RHLRMHEAGV  360
SSERTKCSFD GCAHTFSTMS NLNQHIKAVH LELTPFACGF PGCGMKFSFK HVRDHHEKSS  420
RHVYSHGDFE ASDEQFRSRP RGGRKRKYPV IETLMRKRIV PPGEADPILN NGSEYLSRLL  480
SSGESEDDM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1438446RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024185714.11e-154transcription factor IIIA-like isoform X1
SwissprotQ84MZ42e-87TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A068V6C10.0A0A068V6C1_COFCA; Uncharacterized protein
STRINGVIT_08s0040g00240.t011e-173(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447