PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_384_iso_7
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 399aa    MW: 46179.9 Da    PI: 7.5618
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_384_iso_7genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.75.4e-07107128223
                                         EETTTTEEESSHHHHHHHHHHT CS
                             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                         +C+ Cg sF+ + +L++H+++H
  cra_locus_384_iso_7_len_1193_ver_3 107 VCHECGVSFKKPAYLRQHMQSH 128
                                         6*******************99 PP
2zf-C2H2188.1e-06292316123
                                         EEET..TTTEEESSHHHHHHHHHHT CS
                             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                         ++Cp  dC+ s++rk++L+rH+  H
  cra_locus_384_iso_7_len_1193_ver_3 292 FTCPvdDCHSSYRRKDHLTRHLLQH 316
                                         89*******************9887 PP
3zf-C2H2157.3e-05321346123
                                         EEET..TTTEEESSHHHHHHHHHH.T CS
                             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                         ++Cp  +C  +F  + n+krH++  H
  cra_locus_384_iso_7_len_1193_ver_3 321 FECPgdNCQSRFAFQGNMKRHMKEfH 346
                                         89*********************988 PP
4zf-C2H218.45.8e-06360384123
                                         EEET..TTTEEESSHHHHHHHHHHT CS
                             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                         y+C+   Cgk+F+  s L++H  +H
  cra_locus_384_iso_7_len_1193_ver_3 360 YVCSefGCGKVFKFASKLRKHEDSH 384
                                         99*******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.82E-660128No hitNo description
SMARTSM00355326284IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-598129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0098106128IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.094106133IPR007087Zinc finger, C2H2
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-8289318IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.79E-6289318No hitNo description
SMARTSM003550.0059292316IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64292321IPR007087Zinc finger, C2H2
PROSITE patternPS000280294316IPR007087Zinc finger, C2H2
SuperFamilySSF576672.75E-5319347No hitNo description
Gene3DG3DSA:3.30.160.601.9E-4319347IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.28321346IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.432321351IPR007087Zinc finger, C2H2
PROSITE patternPS000280323346IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-7354384IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.157360389IPR007087Zinc finger, C2H2
SMARTSM003550.0073360384IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280362384IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
XXWELAALAE CECALLSTPG FLTKSGAPHR NSSTSPLSEI VSKVEMVEEK SKPVIFRDIR  60
RYYCEYCGIC RSKKALISAH ILSHHQDDLK QGEEDKRETH NGPKMNVCHE CGVSFKKPAY  120
LRQHMQSHSL EXNSYSLFNF YVAIPALTST PLFFNLPNYC CLSSVRFLWF NWKIYGNKPK  180
SEEGLRLVFA LYTCDDDYPF SQTSELKTXH YVLVLYVFCI CAFNSIPXRY VPPVGSLLEA  240
ICFDDLLDIK RCNLYVXLLD FLLGVKHWIP HKELQNARGQ CXLECDQYQR PFTCPVDDCH  300
SSYRRKDHLT RHLLQHQGKL FECPGDNCQS RFAFQGNMKR HMKEFHKEPY SSDEESPKQY  360
VCSEFGCGKV FKFASKLRKH EDSHVKLETV EAFCSEPGX
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ84MZ42e-32TF3A_ARATH; Transcription factor IIIA
STRINGGorai.009G128000.11e-49(Gossypium raimondii)