PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3882_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family CO-like
Protein Properties Length: 391aa    MW: 43682.1 Da    PI: 4.8391
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3882_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.21.3e-061750235
                             zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHk 35
                                         ++r C+ ++e  + l+C+ ++  lC  C  + H+
  cra_locus_3882_iso_5_len_1975_ver_3 17 NPRLCDFCGESTALLYCRADSAKLCLACDRQVHS 50
                                         6799******99*****************99994 PP
2zf-B_box18.15.6e-06661011442
                             zf-B_box  14 lqlfCedCqqllCedClleeHkg.......Htvvpl 42 
                                          +++fC ++++ +C++C  e+H++       H+++pl
  cra_locus_3882_iso_5_len_1975_ver_3  66 ATIFCCTDCSVFCQNCDWESHNNngsfqslHDRRPL 101
                                          899******************889999999998875 PP
3CCT59.71e-20347389143
                                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                                          R+ a++RYkeKrktR+++K+irYesRK++AesR R++GrF+k 
  cra_locus_3882_iso_5_len_1975_ver_3 347 RDSAISRYKEKRKTRRYDKHIRYESRKVRAESRTRIRGRFAKM 389
                                          899**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.6411660IPR000315B-box-type zinc finger
SMARTSM003368.8E-101663IPR000315B-box-type zinc finger
PfamPF006432.7E-51750IPR000315B-box-type zinc finger
CDDcd000211.35E-81950No hitNo description
PROSITE profilePS5101714.872347389IPR010402CCT domain
PfamPF062039.1E-16347389IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MIMNSLGQKQ LQEDAENPRL CDFCGESTAL LYCRADSAKL CLACDRQVHS TNQLFTKQPV  60
GSSVTATIFC CTDCSVFCQN CDWESHNNNG SFQSLHDRRP LEGFTGCPSV NELLGILGFE  120
DLSKKGLLFG DDCIGTCGQR DGEEDVNSGI ESENIYGFSD MLVWETPSVV SLDDFIVSNS  180
SSPGHNFQAM GVPPLPKNRN ATCGKHKEEI LFQLQEMSXL EPNSGDHERE TQPLIEFQPL  240
VPGNNHQSLQ MDASLNQNSQ STLASSHQVN SFQWCGNGDE VADQGFNTLL DSYIDMNQLI  300
PDKDSDVGDS LGQVNGSCED QSHHHVTTET CQIVPGVAVR ELNSQERDSA ISRYKEKRKT  360
RRYDKHIRYE SRKVRAESRT RIRGRFAKME R
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027160532.11e-151zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A1S4D9641e-147A0A1S4D964_TOBAC; zinc finger protein CONSTANS-LIKE 13-like
STRINGPGSC0003DMT4000295911e-145(Solanum tuberosum)