PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3882_iso_9
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family CO-like
Protein Properties Length: 397aa    MW: 44611.2 Da    PI: 4.9202
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3882_iso_9genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.32.8e-071760239
                             zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                                         ++r C+ ++e  + l+C+ ++  lC  C  + H+       Ht+
  cra_locus_3882_iso_9_len_1992_ver_3 17 NPRLCDFCGESTALLYCRADSAKLCLACDRQVHSTnqlftkHTR 60
                                         6799******99*********************66778888875 PP
2zf-B_box24.94.3e-0863107542
                             zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42 
                                           C+++++ ++++fC ++++ +C++C  e+H++       H+++pl
  cra_locus_3882_iso_9_len_1992_ver_3  63 LCDRCDSTPATIFCCTDCSVFCQNCDWESHNNngsfqslHDRRPL 107
                                          6*****************************889999999998875 PP
3CCT59.61e-20353395143
                                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                                          R+ a++RYkeKrktR+++K+irYesRK++AesR R++GrF+k 
  cra_locus_3882_iso_9_len_1992_ver_3 353 RDSAISRYKEKRKTRRYDKHIRYESRKVRAESRTRIRGRFAKM 395
                                          899**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.1531663IPR000315B-box-type zinc finger
SMARTSM003369.5E-151663IPR000315B-box-type zinc finger
PfamPF006434.4E-61760IPR000315B-box-type zinc finger
CDDcd000212.26E-81960No hitNo description
PROSITE profilePS501199.44259107IPR000315B-box-type zinc finger
CDDcd000215.76E-563107No hitNo description
SMARTSM003360.6564107IPR000315B-box-type zinc finger
PROSITE profilePS5101714.872353395IPR010402CCT domain
PfamPF062039.3E-16353395IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MIMNSLGQKQ LQEDAENPRL CDFCGESTAL LYCRADSAKL CLACDRQVHS TNQLFTKHTR  60
WLLCDRCDST PATIFCCTDC SVFCQNCDWE SHNNNGSFQS LHDRRPLEGF TGCPSVNELL  120
GILGFEDLSK KGLLFGDDCI GTCGQRDGEE DVNSGIESEN IYGFSDMLVW ETPSVVSLDD  180
FIVSNSSSPG HNFQAMGVPP LPKNRNATCG KHKEEILFQL QEMSXLEPNS GDHERETQPL  240
IEFQPLVPGN NHQSLQMDAS LNQNSQSTLA SSHQVNSFQW CGNGDEVADQ GFNTLLDSYI  300
DMNQLIPDKD SDVGDSLGQV NGSCEDQSHH HVTTETCQIV PGVAVRELNS QERDSAISRY  360
KEKRKTRRYD KHIRYESRKV RAESRTRIRG RFAKMER
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027160532.11e-164zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A1S4D9641e-161A0A1S4D964_TOBAC; zinc finger protein CONSTANS-LIKE 13-like
STRINGPGSC0003DMT4000295911e-158(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73622228