PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3902_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NF-YB
Protein Properties Length: 158aa    MW: 17519 Da    PI: 4.7082
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3902_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB63.35.1e-201195387
                               NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrk.tingddllwalatlGfed 78
                                        ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +++se+  k   ekrk ti+++ +l al  lGf +
  cra_locus_3902_iso_4_len_806_ver_3 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESK-KFVTEKRKgTIAPEHVLKALEVLGFGE 86
                                        6899******************************************965.6666666659***************** PP

                               NF-YB 79 yveplkvyl 87
                                        y+e++ +  
  cra_locus_3902_iso_4_len_806_ver_3 87 YIEEVYAAY 95
                                        ***986544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-349140IPR009072Histone-fold
SuperFamilySSF471132.01E-3212140IPR009072Histone-fold
PfamPF008088.7E-181479IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MEPMDIVGRT KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLISSESKK  60
FVTEKRKGTI APEHVLKALE VLGFGEYIEE VYAAYEQHKI ETTDTVRGGK WSNGAAMSEE  120
EALAEQQRMF AEARARMNNG GATAPVPAPP KQPETEQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B3e-301213412133Transcription Regulator NC2 beta chain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012832678.12e-90PREDICTED: protein Dr1 homolog
SwissprotP495922e-81NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A022RMH66e-89A0A022RMH6_ERYGU; Uncharacterized protein
STRINGMigut.D01587.1.p9e-90(Erythranthe guttata)
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]