PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_39038_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 221aa    MW: 25218.2 Da    PI: 4.5705
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_39038_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.3e-18137187255
                                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                          +y+GVr+++ +g+++AeIrdp   + k  r++lg++ tae+Aa a ++a+ +l+g
  cra_locus_39038_iso_1_len_705_ver_3 137 RYRGVRRRP-WGKFAAEIRDP---KrKGSRIWLGTYETAEDAALAFDQAAFQLRG 187
                                          59*******.**********8...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.947137195IPR001471AP2/ERF domain
SMARTSM003803.3E-36137201IPR001471AP2/ERF domain
CDDcd000182.58E-31137197No hitNo description
SuperFamilySSF541711.77E-22137196IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.0E-32137196IPR001471AP2/ERF domain
PfamPF008472.0E-12137187IPR001471AP2/ERF domain
PRINTSPR003671.1E-10138149IPR001471AP2/ERF domain
PRINTSPR003671.1E-10161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
XLSSYNQTTI MYQSNAHNSD HLTFLPPLVD YQFLNNDFDF SEIFTDFNYA NYNYNNSTSD  60
NFSGFQFNEN CEEIISPNYA SEDLSDIILT DIFKDQDNYE DEVVAGEQEE ELITTPTSRG  120
GGGGGGCEQR SNEEWIRYRG VRRRPWGKFA AEIRDPKRKG SRIWLGTYET AEDAALAFDQ  180
AAFQLRGSRA RLNFPNLIGS ANAPVRVSPR RRSSSCHLRP Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-29138195360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ9LEM61e-135Q9LEM6_CATRO; AP2-domain DNA-binding protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165