PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_3952_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 748aa MW: 81626.1 Da PI: 7.4301

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_3952_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	96.4	2.6e-30	72	156	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 rW++qe+laL+++r+em+ ++r+++lk+plWeevs+km+e g++rs+k+Ckek+en+ k++k++keg+ ++ + cra_locus_3952_iso_1_len_2447_ver_3 72 RWPRQETLALLKIRSEMGVAFRDSSLKGPLWEEVSRKMAELGYQRSSKKCKEKFENVYKYHKRTKEGRASK--P 143 8******************************************************************95..7 PP trihelix 75 ssstcpyfdqlea 87 + +t+++f+qlea cra_locus_3952_iso_1_len_2447_ver_3 144 DGKTYRFFEQLEA 156 7789*****85 PP
2	trihelix	105.9	2.8e-33	490	575	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 rW+k ev+aLi++r++++ +++++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e cra_locus_3952_iso_1_len_2447_ver_3 490 RWPKAEVQALINLRTNLDMKYQENGPKGPLWEEISAGMSKLGYSRSAKRCKEKWENINKYFKKVKESNKKR-PE 562 8*******************************************************************8.99 PP trihelix 75 ssstcpyfdqlea 87 +s+tcpyf+qlea cra_locus_3952_iso_1_len_2447_ver_3 563 DSKTCPYFHQLEA 575 *********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	4.1E-4	69	131	IPR001005	SANT/Myb domain
CDD	cd12203	2.07E-24	71	136	No hit	No description
Pfam	PF13837	1.2E-19	71	157	No hit	No description
PROSITE profile	PS50090	7.573	71	129	IPR017877	Myb-like domain
SMART	SM00717	6.1E-4	487	549	IPR001005	SANT/Myb domain
Pfam	PF13837	6.6E-23	489	576	No hit	No description
PROSITE profile	PS50090	7.329	489	547	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.5E-4	489	546	IPR009057	Homeodomain-like
CDD	cd12203	1.01E-26	489	554	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence Send to blast
MLGTSSSSLL ATDAAAAAAA AEGNDSGGGA SGGSGEVVGG GGGTIIPGGG GGGFSDEENK 60 GGGGGGGGGG NRWPRQETLA LLKIRSEMGV AFRDSSLKGP LWEEVSRKMA ELGYQRSSKK 120 CKEKFENVYK YHKRTKEGRA SKPDGKTYRF FEQLEALESN PNPSSSLHHH QLPPPPPPPR 180 QQQQQPPVMA AVPIQPPSAN NPPPPPSSHV NVTVSSPNPV SFSPSVVHNP IMSQLPLPST 240 TTNAAVATNN NNIQAAAASS SSSSSSSKHS HHQHPHPNLS TTSNLLSDST SSSSTSSDED 300 IGRRHNKKKR KFKDFFERLM KDVIDKQEEL QRKFLETLEK RERDRMIREE AWRVQEMARM 360 NRELDLLAQE RSMAAAKDSA IMQFLQKVTG QQNLQTPTPP SISVPNTNNN YNNNIPPTPN 420 PVSLPENHPS PQPISVSAPS LPVASVSPSP SMVATQIVPA SSLALVSKSD NGPGGEKERE 480 NFMGSSSSSR WPKAEVQALI NLRTNLDMKY QENGPKGPLW EEISAGMSKL GYSRSAKRCK 540 EKWENINKYF KKVKESNKKR PEDSKTCPYF HQLEALYKEK AKSDHHPHHH HVSSYVSGYS 600 TNPLKPENNN PNMVPIMARP EQQWPQEEDH ESDNMDQIND HDEDDVDDDD DEDEDGSGSG 660 GYEIVTNKTA AAAASSSVAT TTAAEXAKGK KKERERERVA KAKDQANGGQ IFAGKMSEGR 720 ELRDEWGQKA AKQRQMWWWE VVMGGENI

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence Send to blast

MLGTSSSSLL ATDAAAAAAA AEGNDSGGGA SGGSGEVVGG GGGTIIPGGG GGGFSDEENK  60
GGGGGGGGGG NRWPRQETLA LLKIRSEMGV AFRDSSLKGP LWEEVSRKMA ELGYQRSSKK  120
CKEKFENVYK YHKRTKEGRA SKPDGKTYRF FEQLEALESN PNPSSSLHHH QLPPPPPPPR  180
QQQQQPPVMA AVPIQPPSAN NPPPPPSSHV NVTVSSPNPV SFSPSVVHNP IMSQLPLPST  240
TTNAAVATNN NNIQAAAASS SSSSSSSKHS HHQHPHPNLS TTSNLLSDST SSSSTSSDED  300
IGRRHNKKKR KFKDFFERLM KDVIDKQEEL QRKFLETLEK RERDRMIREE AWRVQEMARM  360
NRELDLLAQE RSMAAAKDSA IMQFLQKVTG QQNLQTPTPP SISVPNTNNN YNNNIPPTPN  420
PVSLPENHPS PQPISVSAPS LPVASVSPSP SMVATQIVPA SSLALVSKSD NGPGGEKERE  480
NFMGSSSSSR WPKAEVQALI NLRTNLDMKY QENGPKGPLW EEISAGMSKL GYSRSAKRCK  540
EKWENINKYF KKVKESNKKR PEDSKTCPYF HQLEALYKEK AKSDHHPHHH HVSSYVSGYS  600
TNPLKPENNN PNMVPIMARP EQQWPQEEDH ESDNMDQIND HDEDDVDDDD DEDEDGSGSG  660
GYEIVTNKTA AAAASSSVAT TTAAEXAKGK KKERERERVA KAKDQANGGQ IFAGKMSEGR  720
ELRDEWGQKA AKQRQMWWWE VVMGGENI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009618661.1	0.0	PREDICTED: trihelix transcription factor GTL1-like
Refseq	XP_016437883.1	0.0	PREDICTED: trihelix transcription factor GTL1-like
TrEMBL	A0A1S3XDN4	0.0	A0A1S3XDN4_TOBAC; trihelix transcription factor GTL1-like
STRING	XP_009618661.1	0.0	(Nicotiana tomentosiformis)