PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_39635_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

ERF

Protein Properties

Length: 94aa MW: 10413.4 Da PI: 10.801

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_39635_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	29.8	1.5e-09	56	92	1	32
AP2 1 sgykGVrwdkkrgrWvAeIrdpse....ng..krkrfs 32 + y+GVr++ +g+WvAeIr+p + g k +r + cra_locus_39635_iso_1_len_279_ver_3 56 CVYRGVRQRT-WGKWVAEIREPASnladAGlgKAARLW 92 68***999.********64424422253336666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.2E-4	56	75	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.94E-6	57	86	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.6E-11	57	93	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	13.182	57	94	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 94 aa Download sequence Send to blast
XRRNPEFVVE TLLKWKNLNS SNDDDGEGVS KMRKISAKGS KKGCMRGKGG PENSGCVYRG 60 VRQRTWGKWV AEIREPASNL ADAGLGKAAR LWLX

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid-inducible transcription. Involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). {ECO:0000269\|PubMed:11798174, ECO:0000269\|PubMed:21069430}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) treatment (PubMed:11798174). Induced by salt, heat and drought stresses. {ECO:0000269\|PubMed:11798174}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020267191.1	4e-29	dehydration-responsive element-binding protein 2B-like
Swissprot	O80917	8e-24	DRE2E_ARATH; Dehydration-responsive element-binding protein 2E
TrEMBL	A0A1S3ZEN7	2e-26	A0A1S3ZEN7_TOBAC; uncharacterized protein LOC107785980
TrEMBL	A0A1U7YJ50	2e-26	A0A1U7YJ50_NICSY; uncharacterized protein LOC104248568
TrEMBL	A0A287FUM8	3e-26	A0A287FUM8_HORVV; Uncharacterized protein
STRING	XP_009803153.1	3e-27	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7965	15	30

Publications ? help Back to Top
Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615]