PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_3965_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

GRAS

Protein Properties

Length: 208aa MW: 24335.6 Da PI: 7.9297

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_3965_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	194.3	7.6e-60	2	206	169	374
GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv 242 +++++vpfe+n+ +ak+++++++e++++ +gE l+Vn++ +l +++de+v +s+rd+vLkl+k+++P ++v cra_locus_3965_iso_1_len_1138_ver_3 2 CQRFNVPFEYNA-IAKKWDTIQPEDFKIGEGELLVVNCMDRLANVPDETVMENSPRDAVLKLIKKIRPALFVQG 74 6899******.7******************************************************** PP GRAS 243 eqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316 + +ns+ F++rf eal ++s+lfd++e+++pre++er+ E+e+lgr++ nv+aceg+er+er et+++W+ cra_locus_3965_iso_1_len_1138_ver_3 75 VINGTYNSPFFATRFREALFHFSSLFDMFETTVPRENKERTLFEQEILGRDALNVIACEGTERVERPETYKQWQ 148 ********************************************************************** PP GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r +aGFk++pl+ +++k + + ++ + + ++v+e+s++l++gWk+r +++ S+W+ cra_locus_3965_iso_1_len_1138_ver_3 149 VRNIRAGFKQLPLDRETMKRVVSKVASRYHKDFSVDEDSNWLLQGWKGRVVYAQSCWQ 206 *****************99999999788***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	31.19	1	186	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.6E-57	2	206	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
XCQRFNVPFE YNAIAKKWDT IQPEDFKIGE GELLVVNCMD RLANVPDETV MENSPRDAVL 60 KLIKKIRPAL FVQGVINGTY NSPFFATRFR EALFHFSSLF DMFETTVPRE NKERTLFEQE 120 ILGRDALNVI ACEGTERVER PETYKQWQVR NIRAGFKQLP LDRETMKRVV SKVASRYHKD 180 FSVDEDSNWL LQGWKGRVVY AQSCWQPV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_B	9e-14	5	208	212	421	Protein SHORT-ROOT
5b3h_E	9e-14	5	208	212	421	Protein SHORT-ROOT
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027109326.1	1e-112	scarecrow-like protein 30
Swissprot	Q9XE58	2e-91	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A068UKK8	1e-111	A0A068UKK8_COFCA; Uncharacterized protein
STRING	PGSC0003DMT400063769	1e-105	(Solanum tuberosum)
STRING	Migut.D02076.1.p	1e-105	(Erythranthe guttata)

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]