PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3966_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HSF
Protein Properties Length: 343aa    MW: 37774.1 Da    PI: 4.9074
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3966_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.24.1e-36261162101
                                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTX CS
                         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksksk 75 
                                          Fl+k+y++++d++++++isw+++g++f+v++++efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++      
  cra_locus_3966_iso_4_len_1476_ver_3  26 FLTKTYQLVDDPTIDDIISWNDDGSAFIVWNPTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKLVPDR------ 93 
                                          9****************************************************************999...... PP

                                          TTSEEEEESXXXXXXXXXXXXXXXXX CS
                         HSF_DNA-bind  76 ekiweFkhksFkkgkkellekikrkk 101
                                             weF+++ F++g+k ll++i+r+k
  cra_locus_3966_iso_4_len_1476_ver_3  94 ---WEFSNECFRRGEKGLLCDIQRRK 116
                                          ...*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.1E-3820110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.4E-5822115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.02E-3523115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.1E-3226115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-202649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MPPSPAERNG GESTVGDAPR SLPTPFLTKT YQLVDDPTID DIISWNDDGS AFIVWNPTEF  60
ARDLLPKYFK HNNFSSFVRQ LNTYGFRKLV PDRWEFSNEC FRRGEKGLLC DIQRRKVVTP  120
AAVSPASPTL PPVVAVKAQA PLLTVSPTDS GEEQVISSTS SPGTVREPAP NASGTAELIG  180
ENERLKKENI QLNKELSEMK SLCNNIYVLM SSYAGNNNNN NNSSSGGGNN DQSAESSQVM  240
KALDLLPASR SRLCEEMMNT DDGGGGEDRM DLDARLFGVA IGMKRARQNE RAMADDYREL  300
QLQQPGTEVK SEPLDQLNGG NSQKTSWCNK QCQRQNSISR VCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-2681159129Heat shock factor protein 1
5d5v_B5e-2681159129Heat shock factor protein 1
5d5v_D5e-2681159129Heat shock factor protein 1
5hdg_A4e-262611510110Heat shock factor protein 1
5hdn_A4e-262611510110Heat shock factor protein 1
5hdn_B4e-262611510110Heat shock factor protein 1
5hdn_C4e-262611510110Heat shock factor protein 1
5hdn_D4e-262611510110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076201.11e-148heat stress transcription factor B-2a
RefseqXP_011076202.11e-148heat stress transcription factor B-2a
SwissprotQ6Z9C84e-82HFB2B_ORYSJ; Heat stress transcription factor B-2b
SwissprotQ9SCW43e-83HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A068VLL81e-144A0A068VLL8_COFCA; Uncharacterized protein
STRINGXP_009803855.11e-128(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]