PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3991_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 121aa    MW: 13429.4 Da    PI: 9.8862
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3991_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-091213656
                                         HCTS-HHHHHHHHHHHHHHHH CS
                             Homeobox 36 klgLterqVkvWFqNrRakek 56
                                         +l+L  rqV vWFqNrRa+ k
  cra_locus_3991_iso_3_len_1543_ver_3  1 RLNLRPRQVEVWFQNRRARTK 21
                                         69*****************98 PP
2HD-ZIP_I/II80.91.9e-261553589
                          HD-ZIP_I/II 35 eLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89
                                         +L+l+prqv+vWFqnrRARtk+kq+E+dye Lk+++++lkeen+rL+ke +eL++
  cra_locus_3991_iso_3_len_1543_ver_3  1 RLNLRPRQVEVWFQNRRARTKLKQTEVDYEILKKCCETLKEENRRLHKELQELKA 55
                                         59***************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000861.80E-5124No hitNo description
PROSITE profilePS5007111.467123IPR001356Homeobox domain
PfamPF000468.4E-7121IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-8127IPR009057Homeodomain-like
SuperFamilySSF466893.98E-8232IPR009057Homeodomain-like
PfamPF021836.9E-122357IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.1E-192367IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
RLNLRPRQVE VWFQNRRART KLKQTEVDYE ILKKCCETLK EENRRLHKEL QELKAMKLTA  60
GPLYMQLPAA TLSMCPSCER ITGGGGGGGS GGENSSNKIS FSTGTKPHFY GPPFANTPAA  120
C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11523RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027092368.11e-58homeobox-leucine zipper protein HAT22-like
SwissprotP466042e-47HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A068TY343e-57A0A068TY34_COFCA; Uncharacterized protein
STRINGGLYMA05G23150.16e-52(Glycine max)
STRINGPGSC0003DMT4000551994e-52(Solanum tuberosum)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]