PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_4008_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

ERF

Protein Properties

Length: 386aa MW: 42414.3 Da PI: 5.2119

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_4008_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.2	1.3e-20	172	221	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g cra_locus_4008_iso_1_len_2046_ver_3 172 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 221 59****9.******965...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.11E-33	171	231	No hit	No description
PROSITE profile	PS51032	23.143	172	229	IPR001471	AP2/ERF domain
SMART	SM00380	9.4E-38	172	235	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.12E-23	172	230	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	3.8E-32	172	230	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.9E-11	173	184	IPR001471	AP2/ERF domain
Pfam	PF00847	4.0E-14	173	221	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.9E-11	195	211	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MAAAIDLYSR NNPVFSSDPL SEELMRALEP FMKGVSLPSS SPVSFSPPST SSSSSSFYPF 60 DSEPNLYTGF SSAPSTTQMF SSQGLSSFGQ IGVEQTSPIG LNLLTPSQIL QIQAQIQLQN 120 QQQYVASLST SVPSFQNCRK LQHQNHQSPL NFLGPKPVAM KQVGNPPKPT KLYRGVRQRH 180 WGKWVAEIRL PKNRTRLWLG TFDTAEEAAL AYDKAAYKLR GDFARLNFPN LRHQLSQDFG 240 DFKPLHSSVD AKLQAICQNL ANSQKQGNSG KKLVSDPEIV NSSSSSSSSA ENNQIQAGFP 300 KLEITYDDSS NGEIIHPISD QEFKVEASAS SSSSSSPLMS DEISSLEMSS PESEITFLDF 360 AEPTFDDSVN FMLQKFPSVE IDWASL

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MAAAIDLYSR NNPVFSSDPL SEELMRALEP FMKGVSLPSS SPVSFSPPST SSSSSSFYPF  60
DSEPNLYTGF SSAPSTTQMF SSQGLSSFGQ IGVEQTSPIG LNLLTPSQIL QIQAQIQLQN  120
QQQYVASLST SVPSFQNCRK LQHQNHQSPL NFLGPKPVAM KQVGNPPKPT KLYRGVRQRH  180
WGKWVAEIRL PKNRTRLWLG TFDTAEEAAL AYDKAAYKLR GDFARLNFPN LRHQLSQDFG  240
DFKPLHSSVD AKLQAICQNL ANSQKQGNSG KKLVSDPEIV NSSSSSSSSA ENNQIQAGFP  300
KLEITYDDSS NGEIIHPISD QEFKVEASAS SSSSSSPLMS DEISSLEMSS PESEITFLDF  360
AEPTFDDSVN FMLQKFPSVE IDWASL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	2e-22	171	229	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027075221.1	1e-158	ethylene-responsive transcription factor ERF056-like
TrEMBL	A0A068TYQ7	1e-156	A0A068TYQ7_COFCA; Uncharacterized protein
STRING	VIT_00s0662g00040.t01	1e-112	(Vitis vinifera)