PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_405_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

DBB

Protein Properties

Length: 204aa MW: 22410.2 Da PI: 6.6028

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_405_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.4	5.9e-08	23	53	4	34
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+ +e+ ++lfC ++ lC +C ++ H cra_locus_405_iso_3_len_1601_ver_3 23 TICDVCESAAAILFCAADEAALCSSCDEKVH 53 68**************************998 PP
2	zf-B_box	28.8	2.6e-09	72	111	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 e ++C+ +e+ ++ ++Ce +++ lC +C + H g H cra_locus_405_iso_3_len_1601_ver_3 72 EVTRCDICESAPAFFYCEVDGSSLCLQCDMLVHVGgkrtH 111 6789**************************9996544455 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.769	20	67	IPR000315	B-box-type zinc finger
SMART	SM00336	9.1E-8	20	67	IPR000315	B-box-type zinc finger
CDD	cd00021	8.45E-6	23	53	No hit	No description
Pfam	PF00643	3.2E-6	23	54	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.2	71	116	IPR000315	B-box-type zinc finger
SMART	SM00336	2.1E-10	71	116	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.7E-7	72	111	IPR000315	B-box-type zinc finger
CDD	cd00021	2.31E-7	74	104	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010100	Biological Process	negative regulation of photomorphogenesis
GO:0070370	Biological Process	cellular heat acclimation
GO:0071483	Biological Process	cellular response to blue light
GO:0005634	Cellular Component	nucleus
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MASAGLLKRX LEESSHRNTI MRTICDVCES AAAILFCAAD EAALCSSCDE KVHLCNKLAN 60 RHIRVGLAEP SEVTRCDICE SAPAFFYCEV DGSSLCLQCD MLVHVGGKRT HGRYLLLRQR 120 VEFPGDKTGR LDELGLQPST PGGPRRESNL TSKETQTQEN QSAHPVPMIE NNMDGEKEVN 180 GKLIDLNARP KRIHGQASNN QVCP

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269\|PubMed:18540109}.
UniProt	Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). Acts as a negative regulator of blue light-mediated inhibition of hypocotyl elongation through increase of bioactive gibberellin levels (PubMed:20872270). Acts as a repressor of thermotolerance by modulating expression of a set of heat shock-responsive genes (PubMed:23238922). {ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:20872270, ECO:0000269\|PubMed:23238922}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By blue light (PubMed:20872270) and heat shock (at protein level) (PubMed:23238922). {ECO:0000269\|PubMed:20872270, ECO:0000269\|PubMed:23238922}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021626779.1	2e-99	B-box zinc finger protein 19-like isoform X1
Refseq	XP_021626780.1	2e-99	B-box zinc finger protein 19-like isoform X1
Refseq	XP_021626781.1	2e-99	B-box zinc finger protein 19-like isoform X1
Refseq	XP_021626782.1	2e-99	B-box zinc finger protein 19-like isoform X1
Refseq	XP_021626783.1	1e-99	B-box zinc finger protein 19-like isoform X2
Refseq	XP_021626785.1	1e-99	B-box zinc finger protein 19-like isoform X2
Refseq	XP_021626786.1	1e-99	B-box zinc finger protein 19-like isoform X2
Refseq	XP_021626787.1	1e-99	B-box zinc finger protein 19-like isoform X2
Swissprot	C0SVM5	8e-70	BBX19_ARATH; B-box zinc finger protein 19
Swissprot	Q9SJU5	8e-70	BBX18_ARATH; B-box zinc finger protein 18
TrEMBL	A0A251JTQ9	3e-98	A0A251JTQ9_MANES; Uncharacterized protein
TrEMBL	A0A2C9UZ82	4e-98	A0A2C9UZ82_MANES; Uncharacterized protein
STRING	cassava4.1_016111m	7e-99	(Manihot esculenta)

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang X,Lin R Light signaling differentially regulates the expression of group IV of the B-box zinc finger family. Plant Signal Behav, 2017. 12(9): p. e1365213 [PMID:28922622]