PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_40960_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 157aa    MW: 17016.1 Da    PI: 11.0239
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_40960_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.6e-0960100954
                                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                           r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  cra_locus_40960_iso_1_len_656_ver_3  60 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 100
                                          699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.43451100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-1452110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-1555110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-1457106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-661100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.93E-774105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
XGGGGGNGGG SGNSSNSVAA MREMIFRIAA MQPIHIDPES VKPPKRRNVK ISKDPQSVAA  60
RHRRERISER IRILQRLVPG GTKMDTASML DEAIHYVKFL KNQVQSLERA AANRPVGTAP  120
GIGFPVPMSS GSYLPGSVTK VYHHHQAHQN VQHYADA
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027090906.15e-78transcription factor HEC2-like
RefseqXP_027093283.14e-78transcription factor HEC2-like
RefseqXP_027147948.14e-78transcription factor HEC2-like
SwissprotQ9SND47e-48HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A068VLN91e-76A0A068VLN9_COFCA; Uncharacterized protein
STRINGVIT_18s0001g10400.t017e-76(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]