PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_410_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Whirly

Protein Properties

Length: 183aa MW: 20753.7 Da PI: 10.0472

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_410_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	165.3	1.6e-51	23	146	16	139
Whirly 16 ptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkv 90 +f++ dsg ++++r+G+++l++ ++++erky+Wekkq falsatev+ l++l+++ s effhdp++k+sn+G+v cra_locus_410_iso_3_len_1184_ver_3 23 RQFSKSDSGGFRVDRRGSIMLKFWPSVGERKYNWEKKQAFALSATEVGALINLGPHSSVEFFHDPSMKSSNAGQV 97 579999******************************************************************* PP Whirly 91 rkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 rk+l+++ pdGsG++++l+v n+++++ne+f+vPv+ aef v+r++++ cra_locus_410_iso_3_len_1184_ver_3 98 RKSLSIKAQPDGSGYLFSLNVVNNILQTNERFVVPVTAAEFEVMRTAFS 146 ********************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54447	1.18E-49	22	163	IPR009044	ssDNA-binding transcriptional regulator
Pfam	PF08536	4.6E-50	24	143	IPR013742	Plant transcription factor
Gene3D	G3DSA:2.30.31.10	1.3E-59	24	164	IPR009044	ssDNA-binding transcriptional regulator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006281	Biological Process	DNA repair
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005739	Cellular Component	mitochondrion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
IEYLPPILFS RAKLRFLQNQ YFRQFSKSDS GGFRVDRRGS IMLKFWPSVG ERKYNWEKKQ 60 AFALSATEVG ALINLGPHSS VEFFHDPSMK SSNAGQVRKS LSIKAQPDGS GYLFSLNVVN 120 NILQTNERFV VPVTAAEFEV MRTAFSFALP HILGWDQYTN QPPQSVSGKP LQSALLMESE 180 WDK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3n1h_A	6e-73	25	162	33	170	StWhy2
3n1i_A	6e-73	25	162	33	170	protein StWhy2
3n1j_A	6e-73	25	162	33	170	Protein StWhy2
3n1k_A	6e-73	25	162	33	170	protein StWhy2
3n1l_A	6e-73	25	162	33	170	protein StWhy2
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Functional Description ? help Back to Top
Source	Description
UniProt	Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269\|PubMed:21911368}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027089713.1	4e-81	single-stranded DNA-binding protein WHY2, mitochondrial-like
Refseq	XP_027148493.1	3e-81	single-stranded DNA-binding protein WHY2, mitochondrial
Swissprot	D9J034	2e-77	WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBL	A0A2G9G9W4	5e-79	A0A2G9G9W4_9LAMI; Uncharacterized protein
STRING	XP_009772771.1	3e-77	(Nicotiana sylvestris)