PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_410_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Whirly

Protein Properties

Length: 241aa MW: 27208.9 Da PI: 10.6388

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_410_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	175.2	1.4e-54	66	204	1	139
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesce 75 s++k+kaa+ + +f++ dsg ++++r+G+++l++ ++++erky+Wekkq falsatev+ l++l+++ s e cra_locus_410_iso_5_len_1080_ver_3 66 SIFKGKAAFLQNQYFRQFSKSDSGGFRVDRRGSIMLKFWPSVGERKYNWEKKQAFALSATEVGALINLGPHSSVE 140 79*********************************************************************** PP Whirly 76 ffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 ffhdp++k+sn+G+vrk+l+++ pdGsG++++l+v n+++++ne+f+vPv+ aef v+r++++ cra_locus_410_iso_5_len_1080_ver_3 141 FFHDPSMKSSNAGQVRKSLSIKAQPDGSGYLFSLNVVNNILQTNERFVVPVTAAEFEVMRTAFS 204 ***********************************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.30.31.10	2.5E-67	54	222	IPR009044	ssDNA-binding transcriptional regulator
SuperFamily	SSF54447	3.22E-57	59	221	IPR009044	ssDNA-binding transcriptional regulator
Pfam	PF08536	8.7E-53	67	201	IPR013742	Plant transcription factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006281	Biological Process	DNA repair
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005739	Cellular Component	mitochondrion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MMLRRVSNQF LKSIFRNQIF PKRTSAEVVG TSFWFQSITT QSEKSTAGKN FRADGKLGDR 60 VFASYSIFKG KAAFLQNQYF RQFSKSDSGG FRVDRRGSIM LKFWPSVGER KYNWEKKQAF 120 ALSATEVGAL INLGPHSSVE FFHDPSMKSS NAGQVRKSLS IKAQPDGSGY LFSLNVVNNI 180 LQTNERFVVP VTAAEFEVMR TAFSFALPHI LGWDQYTNQP PQSVSGKPLQ SALLMESEWD 240 K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3n1h_A	4e-81	55	220	5	170	StWhy2
3n1i_A	4e-81	55	220	5	170	protein StWhy2
3n1j_A	4e-81	55	220	5	170	Protein StWhy2
3n1k_A	4e-81	55	220	5	170	protein StWhy2
3n1l_A	4e-81	55	220	5	170	protein StWhy2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269\|PubMed:21911368}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027092747.1	1e-102	single-stranded DNA-binding protein WHY2, mitochondrial-like
Swissprot	D9J034	1e-93	WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBL	A0A1S4DCK9	1e-95	A0A1S4DCK9_TOBAC; single-stranded DNA-bindig protein WHY2, mitochondrial isoform X3
TrEMBL	A0A1S4DCW1	1e-95	A0A1S4DCW1_TOBAC; single-stranded DNA-bindig protein WHY2, mitochondrial isoform X4
TrEMBL	A0A1U7W2E7	1e-95	A0A1U7W2E7_NICSY; single-stranded DNA-bindig protein WHY2, mitochondrial isoform X3
TrEMBL	A0A1U7WDQ3	1e-95	A0A1U7WDQ3_NICSY; single-stranded DNA-bindig protein WHY2, mitochondrial isoform X2
STRING	XP_009772771.1	1e-94	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9782	22	28