PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_41820_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Protein Properties

Length: 163aa MW: 18302 Da PI: 6.7879

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_41820_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31.4	3.3e-10	91	144	42	95
TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEE CS B3 42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvk 95 +g+sWe +l + +s++ l k Wk F ++ngLk+gD + +l ++ ++ +++v+ cra_locus_41820_iso_2_len_486_ver_3 91 RGKSWETTL--CVNSKMKKLDKRWKLFIDDNGLKAGDALFWELLESsnEKVKFKVQ 144 79*****..99999999*********************77551355555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.9E-12	46	147	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.46E-12	46	139	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.209	49	149	IPR003340	B3 DNA binding domain
CDD	cd10017	4.39E-10	52	147	No hit	No description
Pfam	PF02362	8.2E-8	91	146	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
XTALLFNLII AEVEKKSMES KQDELHEGNR SSSMLPFDDD VLPFSTPYIH FILTKSHVNP 60 VYVLILPSRL YPNLPSATGP TLMVPTTILC RGKSWETTLC VNSKMKKLDK RWKLFIDDNG 120 LKAGDALFWE LLESSNEKVK FKVQIIKGDF PAELAAKIDG GEG

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1819	21	54