PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4184_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family B3
Protein Properties Length: 319aa    MW: 36736.4 Da    PI: 5.6472
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4184_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.69.6e-139583687
                                         EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                                   B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                                         ++l+d+ g++W+vkl  ++ +++  +++GW +Fv++n ++++Df+ F++d++
  cra_locus_4184_iso_1_len_2078_ver_3  9 VSLRDKYGNVWSVKL--TNIDNELHFEEGWAKFVEDNSIEDKDFLFFQFDDD 58
                                         789************..******99***********************8764 PP
2B333.76.6e-112223041396
                                          TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                                   B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                                          +  l++p + ++++g +++ + + tl+d++gr+W  + + +  +++++  +GW +F++ n + ++D +v ++++
  cra_locus_4184_iso_1_len_2078_ver_3 222 REELYVPIEVLKDIG-VTRLPPKATLRDSKGRTWVTYRTKWHDGREFF-VGGWASFCRMNFVGDNDQCVCEFVK 293
                                          567899999998885.6678889***********87777777777765.56********************885 PP

                                          S.SEE..EEEE CS
                                   B3  87 r.sefelvvkv 96 
                                            ++ el +++
  cra_locus_4184_iso_1_len_2078_ver_3 294 GnKKNELIIQI 304
                                          54888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.449169IPR003340B3 DNA binding domain
SMARTSM010190.28169IPR003340B3 DNA binding domain
PfamPF023622.9E-10958IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-12967IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-13971IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-14208294IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-13208297IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.587210308IPR003340B3 DNA binding domain
CDDcd100176.59E-9211304No hitNo description
SMARTSM010190.0098213308IPR003340B3 DNA binding domain
PfamPF023622.6E-9222304IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MLETLLHGVS LRDKYGNVWS VKLTNIDNEL HFEEGWAKFV EDNSIEDKDF LFFQFDDDKL  60
IDVKLIGRGE CGKRGVGAPR SSQDREETID VEMEDVNDIE MEGQENESIG EQVDEEDEED  120
DDEDVRKQEN RRFQKQLKRE LSILRKEVAT LTRKVGETES KDTNGGSRKS SRMKELPVQK  180
PAGAKRGRRK NPDYYGSAIF RSGILPLPKN PYFVAGVRPK RREELYVPIE VLKDIGVTRL  240
PPKATLRDSK GRTWVTYRTK WHDGREFFVG GWASFCRMNF VGDNDQCVCE FVKGNKKNEL  300
IIQIQVVPTI NNAKLQKTA
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264